View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19738_low_14 (Length: 309)

Name: NF19738_low_14
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19738_low_14
NF19738_low_14
[»] chr5 (1 HSPs)
chr5 (1-309)||(9214359-9214652)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 9214652 - 9214359
Alignment:
Q  1 aattgttttttatttgagtaagtaaagttgttgatggnnnnnnnatattgaagcacgatgtgtggtttaaaggggaatttggaagaagttgttggagttc 100  Q
    ||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9214652 aattgttttttatttgagtaagtaacgttgttgatggtttttttatattgaagcacgatgtgtggtttaaaggggaatttagaagaagttgttggagttc 9214553  T
Q  101 caacctcggtgccagtgcgtgtagctcacgagcttcttctagctggccataagtatttggatgtaaggtaaagtaaccgattaatatatacttactgata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  9214552 caacctcggtgccagtgcgtgtagctcacgagcttcttctagctggccataagtatttggatgtaaggtaaagtaaccgattaa--tatacttactgata 9214455  T
Q  201 atgttttggaattgtgatttggaagaagccaaaactcacgactttccatacctgtttattgtgattgtgcaggaccacggaagagtttaatgctggacac 300  Q
    ||||             ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9214454 atgt-------------tttggaagaagccaaaaatcacgactttccatacctgtttattgtgattgtgcaggaccacggaagagtttaatgctggacac 9214368  T

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