View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19738_low_21 (Length: 236)

Name: NF19738_low_21
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19738_low_21
NF19738_low_21
[»] chr3 (1 HSPs)
chr3 (34-216)||(31891921-31892103)
[»] chr7 (2 HSPs)
chr7 (34-220)||(28869507-28869693)
chr7 (123-176)||(38316806-38316859)
[»] chr8 (1 HSPs)
chr8 (64-220)||(45162918-45163074)
[»] chr6 (1 HSPs)
chr6 (123-176)||(18460666-18460719)
[»] chr4 (2 HSPs)
chr4 (123-176)||(32893813-32893866)
chr4 (123-176)||(49346315-49346368)
[»] chr2 (1 HSPs)
chr2 (123-176)||(17947050-17947103)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 31892103 - 31891921
Alignment:
Q  34 tttatcaacctccatccacaaccaccattaatggcttgtctttaaataccaacccaaattttccatcaccgtcaagtgtccgacgtggctgtaccaacct 133  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||    
T  31892103 tttatcaacctccacccacaaccaccattaatggcttgtctttaaataccaacccagattttccatcaccatcaagtgtccgacgtggctgtaccaagct 31892004  T
Q  134 caggtgcctcgatctcttccagaactacttcaccggccaaatcttaacgacctcaaaacactgacccatctcaatcttggcgg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31892003 caggtgcctcgatctcttccagaactacttcaccggccaaatcttaacgacctcaaaacactgacccatctcaatcttggcgg 31891921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 34 - 220
Target Start/End: Complemental strand, 28869693 - 28869507
Alignment:
Q  34 tttatcaacctccatccacaaccaccattaatggcttgtctttaaataccaacccaaattttccatcaccgtcaagtgtccgacgtggctgtaccaacct 133  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||    
T  28869693 tttatcaacctccacccacaaccaccattaatggcttgtctttaaataccaacccagatttcccatcaccatcaagtgtccgacgtggctgtaccaacct 28869594  T
Q  134 caggtgcctcgatctcttccagaactacttcaccggccaaatcttaacgacctcaaaacactgacccatctcaatcttggcggcaag 220  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28869593 caggtgcctccatctcttccagaactacttcaccgaccaaatcttaacgacctcaaaacactgacccatctcaatcttggcggcaag 28869507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 38316859 - 38316806
Alignment:
Q  123 tgtaccaacctcaggtgcctcgatctcttccagaactacttcaccggccaaatc 176  Q
    ||||||||||| ||||||||| ||||| |||| || ||||||||||||||||||    
T  38316859 tgtaccaaccttaggtgcctcaatctcctccaaaattacttcaccggccaaatc 38316806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 64 - 220
Target Start/End: Complemental strand, 45163074 - 45162918
Alignment:
Q  64 atggcttgtctttaaataccaacccaaattttccatcaccgtcaagtgtccgacgtggctgtaccaacctcaggtgcctcgatctcttccagaactactt 163  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45163074 atggcttgtctttaaataccaacccagattttccatcaccatcaagtgtccgacgtggctgtaccaacctcaggtgcctcgatctcttctagaactactt 45162975  T
Q  164 caccggccaaatcttaacgacctcaaaacactgacccatctcaatcttggcggcaag 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  45162974 caccggccaaatcttaacgacctcaaaacactgacccatctcaatctctgcggcaag 45162918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 18460666 - 18460719
Alignment:
Q  123 tgtaccaacctcaggtgcctcgatctcttccagaactacttcaccggccaaatc 176  Q
    ||||||||||||||||||||| ||||| |||| || ||||||||||||||||||    
T  18460666 tgtaccaacctcaggtgcctcaatctcctccaaaattacttcaccggccaaatc 18460719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 32893813 - 32893866
Alignment:
Q  123 tgtaccaacctcaggtgcctcgatctcttccagaactacttcaccggccaaatc 176  Q
    ||||||||||||||||||||| ||||| |||| || ||||||||||||||||||    
T  32893813 tgtaccaacctcaggtgcctcaatctcctccaaaattacttcaccggccaaatc 32893866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 49346315 - 49346368
Alignment:
Q  123 tgtaccaacctcaggtgcctcgatctcttccagaactacttcaccggccaaatc 176  Q
    ||||||||||||||||||||| ||||| |||| || ||||||||||| ||||||    
T  49346315 tgtaccaacctcaggtgcctcaatctcctccaaaattacttcaccggtcaaatc 49346368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 17947050 - 17947103
Alignment:
Q  123 tgtaccaacctcaggtgcctcgatctcttccagaactacttcaccggccaaatc 176  Q
    ||||||||||||||||||||| ||||| |||| || ||||||||||||||||||    
T  17947050 tgtaccaacctcaggtgcctcaatctcctccaaaattacttcaccggccaaatc 17947103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University