View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19738_low_23 (Length: 210)
Name: NF19738_low_23
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19738_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 21419715 - 21419903
Alignment:
| Q |
15 |
ttctgattctgtaattaacttttgtactcttgatttttacccgtgcattatttgtatggggtagaatcctttattttgg----ttaatatattacatttt |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21419715 |
ttctgattctgtgattaacttttgtactcttgatttctacccgtgcattatttgtatggggtagaatcctttattttggttaattaatatattacatttt |
21419814 |
T |
|
| Q |
111 |
gatttgtt---nnnnnnngtttgattaacacccaccaaattatgaaagctgagaaaaatatgcctcgtttgattattcggtagttagtg |
196 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
21419815 |
gatttgttaaaaaaaaaagtttgattaacacccaccaaattatgaaagctcagaaaaatatgcctggtttgattttttggtagttagtg |
21419903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University