View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19738_low_4 (Length: 451)
Name: NF19738_low_4
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19738_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 556252 - 556616
Alignment:
| Q |
9 |
gaagaaaataaaatatagacacaataaaatatgtgatttcaaacgtttcttgaactagctagcatatgaataaacaccataaaacagtgaataaacacta |
108 |
Q |
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| T |
556252 |
gaagaaaataaaatatagacacaataaaatatgtgatttcaaacgtttcttgaactagctagcatatgaataaacactataaaacagtgaataaacacta |
556351 |
T |
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| Q |
109 |
ctgttnnnnnnnnnntttaaaacgtttatttatatgttatactcaggagaagttgcgaacaaaataacgaataaatgaaagaatagatgaatcttatgat |
208 |
Q |
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| T |
556352 |
ctgttgcatcaatagtttatagcgtttatttatatgctacactcaggagaagttgcgaacacaataacgaataaatgaaagaatagatgaatcttatgat |
556451 |
T |
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| Q |
209 |
tagattatgagctccnnnnnnnnnnnnnnnnggtcaaagattatgagctctaatatatgttaatgttcgtcattaaatttaaaggacttagttagtgaat |
308 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
556452 |
tagattatgagctc----tttttttttttttggtcaaagattatgagctctaatatatgttaatgttcgtcattaaatttagaggacatagttagtgaat |
556547 |
T |
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| Q |
309 |
gtattctttaatagaaataatctgttcctcaaagatattctaaaaagaattgtatcgtgttaaaattga |
377 |
Q |
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| T |
556548 |
gtattctttaatagaaataatctgttcctcaaagatattctaaaaagaattgtatcgtgttaaaattga |
556616 |
T |
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