View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19738_low_5 (Length: 448)
Name: NF19738_low_5
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19738_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 233 - 435
Target Start/End: Complemental strand, 48158139 - 48157938
Alignment:
| Q |
233 |
taagtttggcagtttgattaagaaattatctaatcgagattgttatgtttaagttgctttatactatcttttnnnnnnncgacttcacagttaattgttt |
332 |
Q |
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| T |
48158139 |
taagtttggcagtttgattaagaaattatctaatcgacattgttatgtt-aagttgctttatactatcttttaaaaaaacgacttcacagttaattgttt |
48158041 |
T |
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| Q |
333 |
cactaagttacaagttaggatttctaagaatttggtggtttcagatgtaccatcttcagatttatcatctatgttgcatgttgttgctctagacaattct |
432 |
Q |
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| T |
48158040 |
cactaagttacaagttaggatttctaagaatttggtggtttcagatgtaccatcttcagatttatcatctatgttgcatgttgttgctctagacaattct |
48157941 |
T |
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| Q |
433 |
ttt |
435 |
Q |
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| T |
48157940 |
ttt |
48157938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 48159061 - 48158865
Alignment:
| Q |
16 |
acgacagaattaaaatggaatggagtataggcattaagtctgtttatatacacaatttatagtcaaccactaatcaaaagtccctggtattcaactcaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
48159061 |
acgacagaattaaaatggaatggagtataggcattaagtctgtttatatacataatttataatcaaccactaataaaaagtccctggtattcaactcaac |
48158962 |
T |
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| Q |
116 |
caccagatgtcaaatccattaaagcttaatggaattcatttggtggtagtttctataaaatgacatttcttcataagcttacttctaaaagtataatt |
213 |
Q |
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| T |
48158961 |
caccagatgtcaaatccattaaagcttaatggaattcatttggtggtag-ttatataaaatgacatttcttggtaagcttacttctaaaagtataatt |
48158865 |
T |
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