View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19738_low_6 (Length: 407)
Name: NF19738_low_6
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19738_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 26427389 - 26427148
Alignment:
| Q |
17 |
caagagcttgggaagttggttcctggtggaccaaagatgaacacagcagagatgcttaatgctgctgctaattatgtcaagtttcttcaagctcaagttg |
116 |
Q |
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| T |
26427389 |
caagagcttgggaagttggttcctggtggaccaaagatgaacacagcagagatgcttaatgctgctgctaattatgtcaagtttcttcaagctcaagttg |
26427290 |
T |
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| Q |
117 |
gaatgcttcaacttatggaaacatttagcaaggtaattgnnnnnnnnnnnnnnnnnncgcaatattcttatattattagagctcatagttgaatttaatt |
216 |
Q |
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| T |
26427289 |
gaatgcttcaacttatggaaacatttagcaaggtaattgtttttgcttttttattttcgcaatattcttatattattagagctcatagttgaatttaatt |
26427190 |
T |
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| Q |
217 |
acttgttttgtgttcttaggtcttattaacactccaagtgaa |
258 |
Q |
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| T |
26427189 |
acttgttttgtgttcttaggtcttattaacactccaagtgaa |
26427148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 26427070 - 26427006
Alignment:
| Q |
336 |
aatacctagagtgtgtttgttcattgcatatatatttggttactttgtgtgaagaccctttgctt |
400 |
Q |
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| T |
26427070 |
aatacctagagtgtgtttgttcattgcatatatatttggttactttgtgtgaagaccctttgctt |
26427006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 28009492 - 28009630
Alignment:
| Q |
17 |
caagagcttgggaagttggttcctggtggaccaaagatgaacacagcagagatgcttaatgctgctgctaattatgtcaagtttcttcaagctcaagttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28009492 |
caagagcttgggaagttggttcctggtggaccaaagatgaacacagcagagatgcttaatgctgctgctaattatgtcaagtttcttcaagctcaagttg |
28009591 |
T |
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| Q |
117 |
gaatgcttcaacttatggaaacatttagcaaggtaattg |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
28009592 |
gaatgcttcaacttatggaaacatttagcaaggtaattg |
28009630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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