View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19738_low_7 (Length: 391)
Name: NF19738_low_7
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19738_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 344
Target Start/End: Complemental strand, 50676859 - 50676532
Alignment:
| Q |
17 |
aggaaaatgaaaatcaaattaacagaaagtaggagagaaaataaaggaaaagttggggatttttgttattgttagcgttctgcaaattctaggagagaag |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50676859 |
aggaaaatgaaaatcaaattaacagaaactaggagagaaaatagaggaaaaattagggatttttgttattgttagcattctgcaaattctaggagagaag |
50676760 |
T |
|
| Q |
117 |
tcaatagggttgcgctcaccttttagttcagtccgctagttagaatttagatatatggtgattgctctataggcccctcagaatgatcaacctctgagat |
216 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50676759 |
tcaatagggctgcgctcaccttttagctcagtccgctagttagaatttagatatatggtgattgctctataggccccttagaatgatcaacctctgagat |
50676660 |
T |
|
| Q |
217 |
aagtgatcgggaggtacactccgatccaaaaaataacggttgggtggtaaatagttttccattatgagaagaaattgcttgtttcctcccttttcccatt |
316 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50676659 |
aagtgatcgggaggtgcactccgatccaataaataacggttgggtggtaaatagttttccattatgagaagaaattgcttgtttcctcccttttcccatt |
50676560 |
T |
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| Q |
317 |
taaaaagatgaaaatactttagccaaac |
344 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
50676559 |
taaaaagatgaaaatactttagccaaac |
50676532 |
T |
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