View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19739_high_6 (Length: 306)
Name: NF19739_high_6
Description: NF19739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19739_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 294
Target Start/End: Original strand, 28189819 - 28190090
Alignment:
| Q |
5 |
cccctattttttgacataatataaaacaacaaaatcattaattacaaaataacttaggacaaaaatatcttcatagtgttggagaaagataatcttatct |
104 |
Q |
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| T |
28189819 |
cccctattttttgacataatataaaacaacaaaataattaattacaaaataacttaggacaaaaatatcttcatagtgttggagaaagataatcttatct |
28189918 |
T |
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| Q |
105 |
tatcttactctagtgctctacactcttggtcacaagggtaatttaggaattccatcaagtacaaacagaacacgacaaaaacctcaatattaacgaccct |
204 |
Q |
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| T |
28189919 |
ta-cttactctagtgctctacactcttggtcacaagggtaatttaggaattccatcaagtacaaacagaacacgacaaaaacctcaatattaacgac--- |
28190014 |
T |
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| Q |
205 |
ggattttccatcaaaaagaccaatatacccttagggtttaacttggccatgtcaagacctcgtccaagtcaaactcaccaaactcttctt |
294 |
Q |
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| T |
28190015 |
--------------aaagaccaatatacccttagggtttaacttggccatgtcaagaactcgtccaagtcaaactcaccaaactcttctt |
28190090 |
T |
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