View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19739_high_7 (Length: 302)
Name: NF19739_high_7
Description: NF19739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19739_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 37707557 - 37707273
Alignment:
| Q |
13 |
atttaatatgaataatttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagtagctatagt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
37707557 |
atttaatatgaataatttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagcggctctagt |
37707458 |
T |
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| Q |
113 |
gtacgccatactggaatttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcattgta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37707457 |
gtacgccatactggaatttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcattgta |
37707358 |
T |
|
| Q |
213 |
gcttagcagaatttgaacaaagtgttattttccatgatctgcgattctggtgaaaaccaacaagatatttcacagtataatctac |
297 |
Q |
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| T |
37707357 |
gcttagcagaatttgaacaaagtgttattttccatgatctgcgattctggtgaaaacccacaagatatttcacggtataatctac |
37707273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 282
Target Start/End: Complemental strand, 37443340 - 37443068
Alignment:
| Q |
10 |
ttgatttaatatgaataatttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagtagctat |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37443340 |
ttgatttaatatgaataatttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagcagctat |
37443241 |
T |
|
| Q |
110 |
agtgtacgccatactggaatttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcatt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | ||||||| |
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| T |
37443240 |
agtgtacgccatactggaatttgaataaatcgttattgttttgcgatacgttattcgatatagttttgttaaatagtggctctagtgtcactgtagcatt |
37443141 |
T |
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| Q |
210 |
gtagcttagcagaatttgaacaaagtgttattttccatgatctgcgattctggtgaaaaccaacaagatattt |
282 |
Q |
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| T |
37443140 |
gtagcttagcaaaatttgaacaaagtgttattttctgtgatctgcgattctggtgaaaaccaacaagatattt |
37443068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 39647292 - 39647259
Alignment:
| Q |
124 |
tggaatttgaataaatcgttattgttttgcgata |
157 |
Q |
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| T |
39647292 |
tggaatttgaataaatcgttattgttctgcgata |
39647259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 34925316 - 34925263
Alignment:
| Q |
201 |
tatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgc |
254 |
Q |
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| T |
34925316 |
tatagcattgtagcatagcagaatttgaacaaactgctattttccacgatctgc |
34925263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 11501559 - 11501488
Alignment:
| Q |
174 |
tttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttgaacaaagtgttattttcc |
245 |
Q |
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||||| ||||||||||| |||| |||||||||| | |||| ||| ||||||||||||| ||||||||||| |
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| T |
11501559 |
tttgtcaaatagtggctatagtagcattatagcactctagcatagtggaatttgaacaaactgttattttcc |
11501488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 4541583 - 4541645
Alignment:
| Q |
130 |
ttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctct |
192 |
Q |
| |
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||||| |||||||||||||||||| ||| | |||||| || ||| |||| ||||||||||||| |
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| T |
4541583 |
ttgaacaaatcgttattgttttgcaatatgctatttggtacagtgttgtcaaatagtggctct |
4541645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 10363462 - 10363499
Alignment:
| Q |
221 |
gaatttgaacaaagtgttattttccatgatctgcgatt |
258 |
Q |
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| T |
10363462 |
gaatttgaacaaaatgctattttccatgatctgcgatt |
10363499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 21901327 - 21901372
Alignment:
| Q |
200 |
ttatagcattgtagcttagcagaatttgaacaaagtgttattttcc |
245 |
Q |
| |
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||||| ||||||||| ||||||||||| ||||||||| |||||||| |
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| T |
21901327 |
ttataacattgtagcgtagcagaatttaaacaaagtgctattttcc |
21901372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 38434185 - 38434242
Alignment:
| Q |
201 |
tatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgcgatt |
258 |
Q |
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||||||| |||| | |||||||||||||||||| || |||||||| || ||||||||| |
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| T |
38434185 |
tatagcactgtaacatagcagaatttgaacaaactgctattttccgtgttctgcgatt |
38434242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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