View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19739_high_8 (Length: 301)
Name: NF19739_high_8
Description: NF19739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19739_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 2377253 - 2377545
Alignment:
| Q |
1 |
aaaacgaactccaatcaaaccttttatcccaaatccctccaaataaactcattaacccttctcaactccaaacttcaatttcatttttgttctcgttaac |
100 |
Q |
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| T |
2377253 |
aaaacgaactccaatcaaaccttttatcccaaatccctccaaataaactcattaacccttctcaactccaaacttcaatttcatttttgttctcgttaac |
2377352 |
T |
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| Q |
101 |
ccttctcaacaccaagcaatgctatgcaaatgcaattgcatccctttcaaagaaccaccaaaacctaaaacaatggaatcaaattcaatccatcataatc |
200 |
Q |
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| T |
2377353 |
ccatctcaacaccaaacaatgctatgcaaatgcaattgcatccctttcaaagaaccaccaaaacctaaaacaatggaatcaaattcaatccatcataatc |
2377452 |
T |
|
| Q |
201 |
acttccagtatctatctactcatttcaacacgctatttttcgtcaccaaactcatccaatacccaccactctctcaacctcaaacttcatctc |
293 |
Q |
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| T |
2377453 |
acttccagtatctatctactcatttcaacacgctatttttcgtcaccaaactcatccaatgcccaccactctctcaacctcaaacttcatctc |
2377545 |
T |
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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 129 - 293
Target Start/End: Original strand, 28198317 - 28198476
Alignment:
| Q |
129 |
aatgcaattgcatccctttcaaagaaccaccaaaacctaaaacaatggaatcaaattcaatccatcataatcacttccagtatctatctactcatttcaa |
228 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| ||| | | ||||| || | ||| |
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| T |
28198317 |
aatgcaattgcatccctttcaaagaaccatcaaaacctgaaacaatggaatcaaattcaatccacgatcatcacctccgg----tctctacacactccaa |
28198412 |
T |
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| Q |
229 |
cacgctatttttcgtcaccaaactcatccaatacccaccactctctcaacctcaaacttcatctc |
293 |
Q |
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| T |
28198413 |
gacgcca-ttttcgtcgccaaactcatccaatgcgcaccactctctcaacctcaaacttcatctc |
28198476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 13325273 - 13325188
Alignment:
| Q |
7 |
aactccaatcaaaccttttatcccaaatccctccaaataaactcattaacccttctcaactcc-aaacttcaatttcatttttgtt |
91 |
Q |
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||||| |||||||| |||||||| ||||||||| ||||||| |||||||| |||||||||| ||| |||||||||||||||||| |
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| T |
13325273 |
aactctaatcaaactttttatccaaaatccctcaaaataaatccattaaccactctcaactccaaaatttcaatttcatttttgtt |
13325188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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