View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1973_high_4 (Length: 345)
Name: NF1973_high_4
Description: NF1973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1973_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 42473933 - 42474253
Alignment:
| Q |
18 |
tgttatattaattttcggacgtgttggttctagtgttctagctataagcatgtgttatcctggggcaaaagaatggaccactgttaat-atgacgcggta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
42473933 |
tgttatattaattttcggacgtgttggttctagtgttctagctataagcatgtgttatcctggggcaaaagaatggaccactgttaattattacgcggta |
42474032 |
T |
|
| Q |
117 |
ctctcctgtagcatcatgtgcgataagcttatcatttcgaacggattattttattgtcttagccacacaggttggctaggggtgtttgacccacttgatt |
216 |
Q |
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| T |
42474033 |
ctctcctgtagcatcatgtgcaataagcttatcatttcgaacggattattttattgtcttagccacacaggttggctaggggtgtttgacccacttgatt |
42474132 |
T |
|
| Q |
217 |
gcacttggagtgttctcgaagtacctccgcccaaatgcctagtagaaagttctacttccaaaaactggtcgaaagagaaatttatgatagagcacaaagg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42474133 |
gcacttggagtgttctcgaagtacctccgcccaaatgcctagtagaaagttctacttccaaaaactggtcgaaagagaaatttatgatagagcacaaagg |
42474232 |
T |
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| Q |
317 |
aaatatatttgtggttcatat |
337 |
Q |
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||||||||||||||||||||| |
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| T |
42474233 |
aaatatatttgtggttcatat |
42474253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 42479471 - 42479788
Alignment:
| Q |
18 |
tgttatattaattttcggacgtgttggttctagtgttctagctataagcatgtgttatcctggggcaaaagaatggaccactgttaat-atgacgcggta |
116 |
Q |
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|||||||||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| | |
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| T |
42479471 |
tgttatattaattttcagacgtgttggttctagtcttgtagctataagcacgtgttatcctggggaaaaagaatggaccactgttaattatgacgcggaa |
42479570 |
T |
|
| Q |
117 |
ctctcctgtagcatcatgtgcgataagcttatcatttcgaacggattattttattgtcttagccacacaggttggctaggggtgtttgacccacttgatt |
216 |
Q |
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| T |
42479571 |
ctctcatgtagcat---gtgcgataagcttgtcttttctaatgggttattttattgtctgagcgacagaggttggctaggggtgtttgacccacttgaac |
42479667 |
T |
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| Q |
217 |
gcacttggagtgttctcgaagtacctccgcccaaatgcctagtagaaagttctacttccaaaaactggtcgaaagagaaatttatgatagagcacaaagg |
316 |
Q |
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| ||||||| |||| || |||||||||||||||||||||||| ||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
42479668 |
gtacttggactgttttcaaagtacctccgcccaaatgcctagcagagagttctactgccaaaaattggtcgaaagggaaatttatgatagagcacaaagg |
42479767 |
T |
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| Q |
317 |
aaatatatttgtggttcatat |
337 |
Q |
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|||||||||||| |||||||| |
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| T |
42479768 |
aaatatatttgtagttcatat |
42479788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 162 - 337
Target Start/End: Original strand, 42467416 - 42467591
Alignment:
| Q |
162 |
ttattttattgtcttagccacacaggttggctaggggtgtttgacccacttgattgcacttggagtgttctcgaagtacctccgcccaaatgcctagtag |
261 |
Q |
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|||||||||||| | |||||||| ||||| ||| |||||||||||||| |||| | |||||||| ||||||| ||||||||||||||||||||| ||| |
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| T |
42467416 |
ttattttattgtttaagccacactggttgtctacgggtgtttgacccaattgaatatacttggagcgttctcgttgtacctccgcccaaatgcctattag |
42467515 |
T |
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| Q |
262 |
aaagttctacttccaaaaactggtcgaaagagaaatttatgatagagcacaaaggaaatatatttgtggttcatat |
337 |
Q |
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| T |
42467516 |
agagttctactgccaaaaactcggcgaaagagagctttatgatagatcacaaaggaaatatatttgtcattcatat |
42467591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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