View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1973_high_5 (Length: 256)
Name: NF1973_high_5
Description: NF1973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1973_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 22842027 - 22842263
Alignment:
| Q |
4 |
tttttcttactctccttatggtgttattatgtggctttttcacacatgccctcaccacctaaaatgagcttaccatattttctacaatgggagttatctc |
103 |
Q |
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|||||||||| ||| |||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22842027 |
tttttcttaccctcgttatggtgttattatggggctttttcacacatgcccacatcacctaaaatgagcttaccatattttctacaatgggagttatctc |
22842126 |
T |
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| Q |
104 |
aacnnnnnnnctactgtttattcaattaagggttaaaaactatgtaatggactaattgtaaaacctaactttcttttttagatgctgcactatatgtaaa |
203 |
Q |
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||| |||||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
22842127 |
aactttttctctactgtttatttaagtcagggttaaaaactatgtaatggactaattgtaaaatctaactttcttttttaggtgctgcactatatgtaaa |
22842226 |
T |
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| Q |
204 |
gagaagtgacatattggctctagctatagggatgatg |
240 |
Q |
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||||||||||||||||||||| |||||||| |||||| |
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| T |
22842227 |
gagaagtgacatattggctctcgctataggtatgatg |
22842263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 22877571 - 22877807
Alignment:
| Q |
4 |
tttttcttactctccttatggtgttattatgtggctttttcacacatgccctcaccacctaaaatgagcttaccatattttctacaatgggagttatctc |
103 |
Q |
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||||||||||||||||||||||||| ||||| | ||||||| |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
22877571 |
tttttcttactctccttatggtgtttttatgggactttttctgacatgcccacaccacctaaaataagcttaccatattttatacaatgggagttatctc |
22877670 |
T |
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| Q |
104 |
aacnnnnnnnctactgtttattcaattaagggttaaaaactatgtaatggactaattgtaaaacctaactttcttttttagatgctgcactatatgtaaa |
203 |
Q |
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| T |
22877671 |
aactttttttctactgtttattcaattcagggttaaaaactatgtaatggactaattgtaaaacctaactttcttttttaggtgctgcactatatgtaaa |
22877770 |
T |
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| Q |
204 |
gagaagtgacatattggctctagctatagggatgatg |
240 |
Q |
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| T |
22877771 |
gagaagtgacatattggctctcgctataggtatgatg |
22877807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 30 - 240
Target Start/End: Original strand, 22811961 - 22812170
Alignment:
| Q |
30 |
ttatgtggctttttcacacatgccctcaccacctaaaatgagcttaccatattttctacaatgggagttatctcaacnnnnnnnctactgtttattcaat |
129 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | | |
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| T |
22811961 |
ttatgtggctttttctcacatgcccacaccacctaaaatgagcttaccatattttctacaatgggagttatctcaactttttctcta-tgtttatttagt |
22812059 |
T |
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| Q |
130 |
taagggttaaaaactatgtaatggactaattgtaaaacctaactttcttttttagatgctgcactatatgtaaagagaagtgacatattggctctagcta |
229 |
Q |
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| T |
22812060 |
tcagggttaaaaactatgtaatggactaattgtaaaacctaactttcttttttaggtgctgcactgtctgtaaagagaagtgacatattggctcttgcta |
22812159 |
T |
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| Q |
230 |
tagggatgatg |
240 |
Q |
| |
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|||| |||||| |
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| T |
22812160 |
taggtatgatg |
22812170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 22895331 - 22895540
Alignment:
| Q |
39 |
tttttcacacatgccctcaccacctaaaatgagcttaccatattttctacaatgggagttatctcaacnnnnnnnctactgtttattcaattaa------ |
132 |
Q |
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||||||||| |||||| ||| |||||||||||||||||||| ||||||||||||| || |||||||| || ||||||||| |||| | |
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| T |
22895331 |
tttttcacatatgcccacacgacctaaaatgagcttaccattttttctacaatgg-agccatctcaactttttctctgctgtttatttaatttatttaat |
22895429 |
T |
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| Q |
133 |
---gggttaaaaactatgtaatggactaattgtaaaacctaactttcttttttagatgctgcactatatgtaaagagaagtgacatattggctctagcta |
229 |
Q |
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| T |
22895430 |
tcagggttaaaaaccatgtaatggactaattttaaaacctaactttcttttttaggtgctgcactgtctgtaaagagaagtgacatattggctcttgcta |
22895529 |
T |
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| Q |
230 |
tagggatgatg |
240 |
Q |
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|||| |||||| |
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| T |
22895530 |
taggtatgatg |
22895540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 22871011 - 22871100
Alignment:
| Q |
4 |
tttttcttactctccttatggtgttattatgtggctttttcacacatgccctcaccacctaaaatgagcttaccatattttctacaatgg |
93 |
Q |
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|||||||||| ||| |||||||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
22871011 |
tttttcttaccctcgttatggtgttattatgaggcttttccacacatgcccacaccacccaaaatgagcttaccatattttctacaatgg |
22871100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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