View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1973_high_6 (Length: 249)
Name: NF1973_high_6
Description: NF1973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1973_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 30665184 - 30665407
Alignment:
| Q |
14 |
aaaaaacaagccaagattttttagtccaagtttttatttaaaccaaacataatagtaacattaattaaggtagatgcaattacaaacctccaagatcatt |
113 |
Q |
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| T |
30665184 |
aaaaaacaagccaagattttttagtccaagtttttatttaaaccaaacataatagtaacattaattaaggtagatgcaattacaaacctccaagatcatt |
30665283 |
T |
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| Q |
114 |
ggagaaactagaattttccctccttaatagcatcttgattagcatcaccaagagcagcaccttccaaatacttgtctgccaattgaactctcttcacatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30665284 |
ggagaaactagaattttccctccttaatagcatcttgattagcatcaccaagagcagcaccttccaaatacttgtctgccaattgaactctcttcacatt |
30665383 |
T |
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| Q |
214 |
ctcttgttctgagacaagcatgtt |
237 |
Q |
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|||||||||||||||||||||||| |
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| T |
30665384 |
ctcttgttctgagacaagcatgtt |
30665407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 34434593 - 34434690
Alignment:
| Q |
140 |
atagcatcttgattagcatcaccaagagcagcaccttccaaatacttgtctgccaattgaactctcttcacattctcttgttctgagacaagcatgtt |
237 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
34434593 |
atagcatcttgattagcatcaccaagagcagccccttccaaatacttgtctgccaattgaactctcttcacattttcttgttcttggacaagcatgtt |
34434690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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