View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1973_low_2 (Length: 529)
Name: NF1973_low_2
Description: NF1973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1973_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 17 - 521
Target Start/End: Complemental strand, 41707023 - 41706517
Alignment:
| Q |
17 |
ggaatttcattccataccttggattgtgtacctggttcattccacacaactgaaaaatattggggctagattttctcatgtcatcatcttaacagtgaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41707023 |
ggaatttcattccataccttggattgtgtacctggttcattccacacaactgaaaaatattggggctagattttctcatgtcatcatcttaacagtgaca |
41706924 |
T |
|
| Q |
117 |
acatcctcattcaaacaataaaaatatgtacattcatgcatacgtaagattattataattaattaacnnnnnnntatacatgcatataaatacatagtta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41706923 |
acatcctcattcaaacaataaaaatatgtacattcatgcatacgtaagattattataattaattaacaaaaaaatatacatgcatataaatacatagtta |
41706824 |
T |
|
| Q |
217 |
c-gtcatccaccactcaagagcacacgagtggatgaaccatgcataagcaattttatt-ctcacagaagnnnnnnnngacccgacccgtgtctgaaacgg |
314 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
41706823 |
cagtcattcaccactcaagagcacacgagtgtatgaaccatgcataagcaattttatttctcacagaagaaaaataagacccgacccgtgtctgaaacgg |
41706724 |
T |
|
| Q |
315 |
gaaagaatccaattatccaaatgcacccgtgcaggtgcaggtatatacgctagtttttgtcgcgattgagtctatcccaaagcgacgcgcactttctcct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41706723 |
gaaagaatccaattatccaaatgcacccgtgcaggtgcaggtatatacgctagtttttgtcgcgattgagtctatcccaaagcgacgcgcactttctcct |
41706624 |
T |
|
| Q |
415 |
agcaaaacccacgcgcttcttttcaagatcatattcaacttcaaacccttgctgttgataattcccaagtactcctccgggcccaccgctcatttcagct |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41706623 |
agcaaaacccacgcgcttcttttcaagatcatattcaacttcaaacccttgctgttgataattcccaagtactcctccgggcccaccgctcatttcagct |
41706524 |
T |
|
| Q |
515 |
tcatctc |
521 |
Q |
| |
|
||||||| |
|
|
| T |
41706523 |
tcatctc |
41706517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 3743253 - 3743347
Alignment:
| Q |
386 |
ctatcccaaagcgacgcgcactttctcctagcaaaacccacgcgcttcttttcaagatcatattcaacttcaaacccttgctgttgataattccc |
480 |
Q |
| |
|
|||||||||||| ||||||||| | || | || || |||||||||| || || |||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
3743253 |
ctatcccaaagcaacgcgcactctttcttcgcgaaccccacgcgctctttctccagatcataaaccacctcaaacccttgctgttgataattccc |
3743347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University