View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1973_low_3 (Length: 429)
Name: NF1973_low_3
Description: NF1973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1973_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 414
Target Start/End: Original strand, 15450278 - 15450677
Alignment:
| Q |
20 |
gaatagcctttctggtttgagattgagtttttcttatgctttggcttcgtattttcaggaggaggacccgaatagccctcgattttcaacacattttcct |
119 |
Q |
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| T |
15450278 |
gaatagcctttctggtttgagattgagtttatcttatccttcggcttcgtattttcaggaggaggacccgaatagccctcaattttcaacacattttcct |
15450377 |
T |
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| Q |
120 |
tattatctcccgaattcgtagtatgtgcaggaggaggaccagagtagccagtatcattttccaacacannnnnnnncttacccattttagtatgctgata |
219 |
Q |
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| T |
15450378 |
tattatctcccgaattcgtagtatgtgcaggaggagaaccagagtagcccgtatcattttccaacacattttttttcttacccattttagtatgctgata |
15450477 |
T |
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| Q |
220 |
caaatgttaggttcaagcaaaacgttttagatgataatgta-----nnnnnnnnnatgtctttctttggagatatgtgatttatggccttataatttatt |
314 |
Q |
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| T |
15450478 |
caaatgttaggttcaagcaaaacgttttagatgataatgtatattttttttttgtatgtctttctttggagatatgtgatttatggccttataatgtatt |
15450577 |
T |
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| Q |
315 |
tataaacccttcattgtagttgaggtttgaaagctataagctgagtcaaaatgatgtaaattagggttaaattgcaccgtttcccttcatttcatcatat |
414 |
Q |
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| T |
15450578 |
tataaacccttcattgtagttgaggtttgaaagctataagctgagtcaaaatgatgtaaattagggttaaattgcaccgtttcccttcatttcatcatat |
15450677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 271 - 417
Target Start/End: Original strand, 15459882 - 15460022
Alignment:
| Q |
271 |
tgtctttctttggagatatgtgatttatggccttataatttatttataaacccttcattgtagttgaggtttgaaagctataagctgagtcaaaatgatg |
370 |
Q |
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| T |
15459882 |
tgtctttctttggagatatgtgatttatggcctggta-----tttataaacccttcattgtagttgaggtttggaagccata-gctgagtaaaaatgatg |
15459975 |
T |
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| Q |
371 |
taaattagggttaaattgcaccgtttcccttcatttcatcatatatt |
417 |
Q |
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| T |
15459976 |
taaattagggttaaattgcattgtttccgttcatttaatcatatatt |
15460022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 15459661 - 15459813
Alignment:
| Q |
18 |
gcgaatagcctttctggtttgagattgagtttttctt---atgctttggcttcgtattttcaggaggaggacccgaatagccc---tcgattttcaacac |
111 |
Q |
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| T |
15459661 |
gcgaatagcctttctggtttgagagtgggtttttcttaggatccttcggcttcgtattttcaagaggacgaacagaatggctcatatccatttcaagcac |
15459760 |
T |
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| Q |
112 |
attttccttattatctcccgaattcgtagtatgtgcaggaggaggaccagagt |
164 |
Q |
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| T |
15459761 |
attttcctgagcagctctcgaattcgtagcatgtgcaggaggatgaccagagt |
15459813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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