View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1973_low_9 (Length: 237)
Name: NF1973_low_9
Description: NF1973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1973_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 1402879 - 1403093
Alignment:
| Q |
3 |
ggaatttcaacaagtgctttgtattgtgcagtttattttttctccctttcagttattttttattatgactatataaatgcacacggcccatttattgtga |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1402879 |
ggaatttcaacaagtgctttgtattgtgcagtttatttttgctcccttgcagttattttttattgtgactatataaatgcacacggtccatttattgtga |
1402978 |
T |
|
| Q |
103 |
tggcacaagttttattggaaactaaagaatacaatttttgaggcacggacaatcattgaaaaatgttggcctacacctatagaccaactcccgtattttc |
202 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||| |||||||| | |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1402979 |
tggcacaagttttataggaaactaaagaatacaaattttgaagcacggac------ttaaaaatgttggcctacacctatagaccaactcccctattttt |
1403072 |
T |
|
| Q |
203 |
acatggacaactatattgttg |
223 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1403073 |
acatggacaactatattgttg |
1403093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 42758896 - 42758785
Alignment:
| Q |
112 |
ttttattggaaactaaagaatacaatttttgaggcacggacaatcattgaaaaatgttggcctacacctatagaccaactcccgtattttcacatggaca |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42758896 |
ttttattggaaactaaagaatacagtttttgaggcacggacagtcactgaaaaatgttggcctacacctatagaccaactcccatattttcacatggaca |
42758797 |
T |
|
| Q |
212 |
actatattgttg |
223 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42758796 |
actatattgttg |
42758785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University