View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19740_low_1 (Length: 420)
Name: NF19740_low_1
Description: NF19740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19740_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 31060581 - 31060963
Alignment:
| Q |
1 |
cagggcttttaatttcccaaacttggtcacatcatcgagtacgacgaagtccatgtagtcttttctcgatcttagttataccccatccaatgctatgtat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31060581 |
cagggcttttaatttcccaaacttggtcacatcatcaagtacgatgaagtccatgtagtcttttctcgatcttagttataccccatccaatgctatgtat |
31060680 |
T |
|
| Q |
101 |
cttgtcctttatttttagtggatctgaaagaatttgtagttgtaattgaataatccctttacagttattatcaaaaacttatcgatttcattcaatgaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
31060681 |
cttgtcctttatttttagtggatctgaaagaatttgtagttgtaattgaataatccctttacagttattatcaaaaacttatcgaatactttcaatgaaa |
31060780 |
T |
|
| Q |
201 |
cttgttctgcactaaaatttacaatggatttgattgtatatagctttccctattgttgttttgccggagccacacattccccatatccctatcctatcat |
300 |
Q |
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|||||||| ||||||||||||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
31060781 |
cttgttct-------------------atttgattgtataaagctttgcctattgttgttttcccagagccacacattccccatatccctatcctatcat |
31060861 |
T |
|
| Q |
301 |
acaaactttgcttgattgatcatcaataaattcagtagtccaatataagcatactatgcagcacgaacactcattggattaggcttgccacagtgtccga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| || |
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| T |
31060862 |
acaaactttgcttgattgatcatcaataaattcagtagtctaatataagcatactatgaagcacggacactcattggattaggcttgccacagtgtctga |
31060961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 323
Target Start/End: Original strand, 8373540 - 8373801
Alignment:
| Q |
57 |
agtcttttctcgatcttagttataccccatccaatgctatgtatcttgtcctttatttttagtggatctgaaagaatttgtagttgtaattgaataatcc |
156 |
Q |
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|||||||||||||||||| |||| ||| | |||||||||||||||| || ||| ||||||| |||||||||||| |||| ||||| |||||||||| |
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| T |
8373540 |
agtcttttctcgatcttatttatccccactgcaatgctatgtatcttatcttttgtttttaggagatctgaaagaagttgttcctgtaaatgaataatcc |
8373639 |
T |
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| Q |
157 |
ctttacagttattatcaaaaacttatcgatttcattcaatgaaacttgttctgcactaaaatttacaatggatttgattgtatatagctttccctattgt |
256 |
Q |
| |
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|||| | |||| |||| |||||| |||| | | |||||||||||||||| | | || |||| || ||||||| ||||||| |||||||| | | || |
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| T |
8373640 |
cttttctattataatcacaaacttctcgaatactttcaatgaaacttgttttaccctggaattcacgatggattcgattgtagatagctttggccaaggt |
8373739 |
T |
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| Q |
257 |
tgttttgccggagccacacattccccatatccctatcctatcatacaaactttgcttgattgatcat |
323 |
Q |
| |
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||||| ||||| |||| ||||||||||| ||||||||||||| |||| ||||||| ||||| |
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| T |
8373740 |
agttttcccggatccacccattccccata-----atcctatcatacaggctttccttgattcatcat |
8373801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 57 - 330
Target Start/End: Complemental strand, 31174115 - 31173847
Alignment:
| Q |
57 |
agtcttttctcgatcttagttataccccatccaatgctatgtatcttgtcctttatttttagtggatctgaaagaatttgtagttgtaattgaataatcc |
156 |
Q |
| |
|
||||||||||| |||||||| || ||| || |||||||||| |||| | ||||||| || ||||| |||||| |||| ||||||| ||||||| || |
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| T |
31174115 |
agtcttttctctatcttagtcatccccaatgcaatgctatgaatctcttgttttatttgcaggagatctaaaagaagttgttgttgtaaatgaataaccc |
31174016 |
T |
|
| Q |
157 |
ctttacagttattatcaaaaacttatcgatttcattcaatgaaacttgttctgcactaaaatttacaatggatttgattgtatatagctttccctattgt |
256 |
Q |
| |
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|| || | ||||||||| |||||| |||| | | ||||| |||||||||||| | | ||| ||| |||||||| |||||| |||||||| || | || |
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| T |
31174015 |
ctctagaattattatcacaaacttctcgaatactttcaaagaaacttgttctaccttcaaacctacgatggattttattgtagatagctttggctgtggt |
31173916 |
T |
|
| Q |
257 |
tgttttgccggagccacacattccccatatccctatcctatcatacaaactttgcttgattgatcatcaataaa |
330 |
Q |
| |
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|||||| ||||| |||| ||||||||||||||| |||||| || |||||| ||||||||| ||||||||| |
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| T |
31173915 |
tgttttcccggatccacccattccccatatccc-----tatcatgcagactttgtttgattgattatcaataaa |
31173847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 57 - 293
Target Start/End: Original strand, 3400433 - 3400669
Alignment:
| Q |
57 |
agtcttttctcgatcttagttataccccatccaatgctatgtatcttgtcctttatttttagtggatctgaaagaatttgtagttgtaattgaataatcc |
156 |
Q |
| |
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||||||||||| ||||||||||| || | |||||||||| |||| | |||||||| | ||||| |||||| |||| ||||||| |||||| || |
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| T |
3400433 |
agtcttttctcaatcttagttatccctgaggcaatgctatgaatctcttgttttattttcaagagatctaaaagaagttgttgttgtaaaggaataaccc |
3400532 |
T |
|
| Q |
157 |
ctttacagttattatcaaaaacttatcgatttcattcaatgaaacttgttctgcactaaaatttacaatggatttgattgtatatagctttccctattgt |
256 |
Q |
| |
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|| || ||||||||| |||||| |||| | | ||| |||||||||| ||| | || |||| || || ||||||||||||| |||||||| | | || |
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| T |
3400533 |
ctctattattattatcacaaacttctcgaatactttcgatgaaacttgctctacccttaaatctagaacggatttgattgtagatagctttggccgtggt |
3400632 |
T |
|
| Q |
257 |
tgttttgccggagccacacattccccatatccctatc |
293 |
Q |
| |
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|||||| ||||| |||| ||||||||||||||||||| |
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| T |
3400633 |
tgttttcccggatccacccattccccatatccctatc |
3400669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 329
Target Start/End: Complemental strand, 20810263 - 20810104
Alignment:
| Q |
165 |
ttattatcaaaaacttatcgatttcattcaatgaaacttgttctgcactaaaatttacaatggatttgattgtatatagctttccctattgttgttttgc |
264 |
Q |
| |
|
||||||||| |||||| || | | | ||||| |||||||||||| | || ||| ||| ||||||||||||||| | |||||| | | |||||||||| |
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| T |
20810263 |
ttattatcacaaacttctctaatactttcaacgaaacttgttctaccctggaatctacgatggatttgattgtagagagctttggccgtggttgttttgc |
20810164 |
T |
|
| Q |
265 |
cggagccacacattccccatatccctatcctatcatacaaactttgcttgattgatcatcaataa |
329 |
Q |
| |
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| || |||| |||||||||||||||||| ||||| ||||| | ||||||||||||||||| |
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| T |
20810163 |
ctgatccacccattccccatatccctatg-----atacagactttccatgattgatcatcaataa |
20810104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 329
Target Start/End: Complemental strand, 20836618 - 20836459
Alignment:
| Q |
165 |
ttattatcaaaaacttatcgatttcattcaatgaaacttgttctgcactaaaatttacaatggatttgattgtatatagctttccctattgttgttttgc |
264 |
Q |
| |
|
||||||||| |||||| || | | | ||||| |||||||||||| | || ||| ||| ||||||||||||||| | |||||| | | |||||||||| |
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| T |
20836618 |
ttattatcacaaacttctctaatactttcaaggaaacttgttctaccctggaatctacgatggatttgattgtagagagctttggccgtggttgttttgc |
20836519 |
T |
|
| Q |
265 |
cggagccacacattccccatatccctatcctatcatacaaactttgcttgattgatcatcaataa |
329 |
Q |
| |
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| | |||| |||||||||||||||||| ||||| ||||||| ||||||||||||||||| |
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| T |
20836518 |
ctaatccacccattccccatatccctatg-----atacagactttgcatgattgatcatcaataa |
20836459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 20810431 - 20810391
Alignment:
| Q |
5 |
gcttttaatttcccaaacttggtcacatcatcgagtacgac |
45 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||||||||| |
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| T |
20810431 |
gcttttaattgctcagacttggtcacatcatcgagtacgac |
20810391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 20836786 - 20836746
Alignment:
| Q |
5 |
gcttttaatttcccaaacttggtcacatcatcgagtacgac |
45 |
Q |
| |
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|||||||||| | || ||||||||||||||||||||||||| |
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| T |
20836786 |
gcttttaattgctcagacttggtcacatcatcgagtacgac |
20836746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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