View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19741_high_3 (Length: 391)
Name: NF19741_high_3
Description: NF19741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19741_high_3 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0330 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 4 - 382
Target Start/End: Original strand, 18343718 - 18344099
Alignment:
| Q |
4 |
atttaaaatagaatacaatcgcgggattttttgacatattagaaatttgtatatcttgctttgatatagaaccaaatatggattcttatagacctttttt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18343718 |
atttaaaatagaatacaatcgcgggattttttgacatattagaaatttgtatatcttgctttgatatagaaccaaatatggattcttatagaccattttt |
18343817 |
T |
|
| Q |
104 |
gctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttctcnnnnnnnnn---attatcatattggcaaaaatttcta |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
18343818 |
gctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttgtcttttttttttttattatcatattggcaaaaatttcta |
18343917 |
T |
|
| Q |
201 |
aattcnnnnnnntccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatg |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18343918 |
aattcaaaaaaatccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatg |
18344017 |
T |
|
| Q |
301 |
aattcttagttccgtccgccatcccatctaacgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc |
382 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18344018 |
aattcttagttccgtccgccatcccatctaatgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc |
18344099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 213 - 343
Target Start/End: Complemental strand, 36639000 - 36638870
Alignment:
| Q |
213 |
tccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttc |
312 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36639000 |
tccacattttcgcgggcgaatattcactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttc |
36638901 |
T |
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| Q |
313 |
cgtccgccatcccatctaacgaatcagtaag |
343 |
Q |
| |
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||||||||||||||||||| |||| |||||| |
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| T |
36638900 |
cgtccgccatcccatctaatgaattagtaag |
36638870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 36639090 - 36639056
Alignment:
| Q |
129 |
ttgttttgatataaggttctaacgaatccatattt |
163 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
36639090 |
ttgttttgatataatgttctaacgaatccatattt |
36639056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 40 - 382
Target Start/End: Complemental strand, 163589 - 163237
Alignment:
| Q |
40 |
tattagaaatttgtatatcttgctttgatatagaaccaaatatggattcttatagaccttttttgctatccatatctaactagataatgttgttttgata |
139 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
163589 |
tattagaaatttgtatatcttgcttggatataaaaccaaatatggatttttatagaccatttttgctatccatatctaactagataatgttgttttgata |
163490 |
T |
|
| Q |
140 |
taaggttctaacgaatccatatttctcnnnnnnnnn----attatcatat----tggcaaaaatttctaaattcnnnnnnn-tccacattttcgcgggcg |
230 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
163489 |
taaggttctaacgaatccatatttgtctttttttttttttattatcatatatattggcaaaaatttctaaattaaaaaaaaatccacattttcgcgggcg |
163390 |
T |
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| Q |
231 |
aatattt-actctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatct |
329 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
163389 |
aatattttactctttcattataaatttaagatgtgatgttggattagtccacaactcctcaaaaaataatgaattcttagttccgtccaccatcccatct |
163290 |
T |
|
| Q |
330 |
aacgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc |
382 |
Q |
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|
|| ||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
163289 |
aatgaatcagtaagattatgaaatttaatataatcttaagtattcacaagttc |
163237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 163646 - 163610
Alignment:
| Q |
4 |
atttaaaatagaatacaatcgcgggattttttgacat |
40 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| |
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| T |
163646 |
atttaaaatagaatagaatcgcgggattttttgacat |
163610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 67 - 373
Target Start/End: Complemental strand, 9857946 - 9857643
Alignment:
| Q |
67 |
atatagaaccaaatatggattcttatagaccttttttgctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttctc |
166 |
Q |
| |
|
||||||||| |||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||||||| || |
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| T |
9857946 |
atatagaacgaaatatggattcgtatagaccatttttgctatc-atgtctaactagataatgttgttttgata--aggttctaaaaaatccatatttgtc |
9857850 |
T |
|
| Q |
167 |
nnnnnnnnnattatcatattggcaaaaatttctaaattcnnnnnnntccacattttcgcgggcgaatattt-actctttcattataaatttaagatgtaa |
265 |
Q |
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| ||||||||||||||||||| ||||||| ||||||||||| | | |||||||| |||||||||||||||||||||||||||| |
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| T |
9857849 |
ttttttttt-taatcatattggcaaaaatttataaattcaaaaaaatccacattttcacatgtgaatattttactctttcattataaatttaagatgtaa |
9857751 |
T |
|
| Q |
266 |
tgttgggttagtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaacgaatcagtaagattatgaaatttaatataatct |
365 |
Q |
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||| | |||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||| ||||||||| |||||||||||||| | |
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| T |
9857750 |
tgtcagattagcccacaactcctcaaaaaataatgaattcttagttttgtccaccatccaatctaatgaatcaataagattattaaatttaatataattt |
9857651 |
T |
|
| Q |
366 |
taggtatt |
373 |
Q |
| |
|
||||||| |
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|
| T |
9857650 |
gaggtatt |
9857643 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 31058774 - 31058724
Alignment:
| Q |
4 |
atttaaaatagaatacaatcgcgggattttttgacatattagaaatttgta |
54 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31058774 |
atttaaaatagaatacaatcgcgggattttttgacatattagaaatttgta |
31058724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 13433 - 13478
Alignment:
| Q |
40 |
tattagaaatttgtatatcttgctttgatatagaaccaaatatgga |
85 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13433 |
tattagaaatttgtatattttgctttgatatagaaccaaatatgga |
13478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 13376 - 13412
Alignment:
| Q |
4 |
atttaaaatagaatacaatcgcgggattttttgacat |
40 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13376 |
atttaaaatagaatacaatcgcgagattttttgacat |
13412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 31878258 - 31878210
Alignment:
| Q |
213 |
tccacattttcgcgggcgaatatttactctttcattataaatttaagat |
261 |
Q |
| |
|
|||||||||| ||| |||||| ||||||||| |||||||||||||||| |
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|
| T |
31878258 |
tccacatttttgcgaccgaataattactctttaattataaatttaagat |
31878210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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