View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19741_low_2 (Length: 480)

Name: NF19741_low_2
Description: NF19741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19741_low_2
NF19741_low_2
[»] chr2 (2 HSPs)
chr2 (4-480)||(5726846-5727331)
chr2 (337-455)||(26618212-26618334)
[»] chr1 (4 HSPs)
chr1 (333-480)||(15470884-15471035)
chr1 (328-389)||(26088763-26088824)
chr1 (328-480)||(21761101-21761256)
chr1 (399-476)||(26088625-26088706)
[»] chr7 (3 HSPs)
chr7 (336-408)||(7414749-7414821)
chr7 (416-479)||(48582108-48582171)
chr7 (333-389)||(31266820-31266876)
[»] chr5 (2 HSPs)
chr5 (333-416)||(15798823-15798905)
chr5 (426-480)||(28717351-28717405)
[»] chr4 (1 HSPs)
chr4 (333-391)||(42420450-42420508)
[»] chr8 (2 HSPs)
chr8 (332-477)||(9944470-9944619)
chr8 (426-463)||(30202034-30202071)
[»] chr3 (1 HSPs)
chr3 (428-480)||(1639458-1639510)


Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 4 - 480
Target Start/End: Complemental strand, 5727331 - 5726846
Alignment:
Q  4 atactctttcaaaacaaaaccttaggctttgtccacatattggatttaatatgtttaggttcatggtgcttatgtacgaattgtgatggcctaaaataca 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5727331 atactctttcaaaacaaaaccttaggctttgtccacatattggatttaatatgtttaggttcatggtgcttatgtacgaattgtgatgacctaaaataca 5727232  T
Q  104 ctatataacttatgcaaatgtacgatggatcatcgtatttatgacatacaattaccggtggttgtgacacttgacaaaatgaggtatagcaaaggacaaa 203  Q
     ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5727231 ttatataacttatgcaaatgtacggtggatcatcgtatttatgacatacaattaccggtggttgtgacacttgacataatgaggtatagcaaaggacaaa 5727132  T
Q  204 tgactaaacatgaatatttgtctctcactacccataaaaataaatctcaaatcgttcactaaactatgaaaacctttttattcgaagtacaaattatc-- 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  5727131 tgactaaacatgaatatttgtctctcactacccataaaaataaatctcaaatcgttcactaaactatgaaaacctttttattcgaagtacaaattatcaa 5727032  T
Q  302 -------aaaacactctttttatcgagaaaataatgaaaaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactcatgc 394  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||    
T  5727031 aaatatcaaaacactctttttatcgagaaaataatgaaaaatgaggaaatgaggttatgtatgacctttaaaatgacacgcagcgtaagttaactcacgc 5726932  T
Q  395 aagattaacacatgcatgagttcacgccagaggcatttttggaagtttggttgtgagtgaggaaaacttgttggaagaagagcatt 480  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  5726931 aagattaacacatgcatgagttcacgccagaggcattttcggaagtttggttgtgagtgagtaaaacttgttggaagaagagcatt 5726846  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 337 - 455
Target Start/End: Original strand, 26618212 - 26618334
Alignment:
Q  337 gaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactcatgcaagattaacacatgcatgagt----tcacgccagaggcattt 432  Q
    ||||||||||||||||||||||||||||||| |||||| || || ||||||||||  |  | ||||||||||| |||||    ||||||||| |||||||    
T  26618212 gaggaaatgaggttatgtctgacctttaaaaggacacgtagtgtgagttaactcacactggtttaacacatgcgtgagttaactcacgccaggggcattt 26618311  T
Q  433 ttggaagtttggttgtgagtgag 455  Q
    |  |||||||||||| |||||||    
T  26618312 tcagaagtttggttgggagtgag 26618334  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 333 - 480
Target Start/End: Complemental strand, 15471035 - 15470884
Alignment:
Q  333 aaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactcatgcaagattaacacatgcatgagt----tcacgccagaggc 428  Q
    ||||||||||||||| |||||||||| |||||||| || ||||| ||| |||||||||| ||  | ||||||||||| |||||    |||||| || ||     
T  15471035 aaatgaggaaatgagcttatgtctgagctttaaaaggatacgcaacgtgagttaactcacgctggtttaacacatgcgtgagttaactcacgctaggggt 15470936  T
Q  429 atttttggaagtttggttgtgagtgaggaaaacttgttggaagaagagcatt 480  Q
    ||||| | ||||||||||| || | || |||||||||||| |||||||||||    
T  15470935 attttcgaaagtttggttgggaataagcaaaacttgttgggagaagagcatt 15470884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 26088824 - 26088763
Alignment:
Q  328 atgaaaaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaact 389  Q
    |||| ||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  26088824 atgagaaatgagaaaatgaggttatgtctgacctttaaaaggacacgcagcgtgagttaact 26088763  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 480
Target Start/End: Original strand, 21761101 - 21761256
Alignment:
Q  328 atgaaaaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactcatgcaagattaacacatgcatgagtt----cacgcca 423  Q
    |||| ||||||||||||||| |  ||| ||| |||||||| ||||||||  || |||||||||| ||  | ||||||||||| ||||||    |||||      
T  21761101 atgagaaatgaggaaatgagttgctgt-tgagctttaaaaggacacgcaatgtgagttaactcacgctggtttaacacatgcgtgagttaactcacgctg 21761199  T
Q  424 gaggcatttttggaagtttggttgtgagtgaggaaaacttgttggaagaagagcatt 480  Q
    | ||||||||| ||||||||| ||| |||||  ||||||||||||||||||||||||    
T  21761200 ggggcatttttagaagtttggctgtaagtgaacaaaacttgttggaagaagagcatt 21761256  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 476
Target Start/End: Complemental strand, 26088706 - 26088625
Alignment:
Q  399 ttaacacatgcatgagtt----cacgccagaggcatttttggaagtttggttgtgagtgaggaaaacttgttggaagaagag 476  Q
    ||||||||||||||||||    ||| |||  |||||||| ||||||||| ||| || |||| |||||||||||| |||||||    
T  26088706 ttaacacatgcatgagttaactcacaccatgggcattttcggaagtttgattgggaatgagcaaaacttgttgggagaagag 26088625  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 408
Target Start/End: Original strand, 7414749 - 7414821
Alignment:
Q  336 tgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactcatgcaagattaacacatg 408  Q
    ||||||||||||||| | | || |||||||||||||||||||||| |||||||||| |||  |||||||||||    
T  7414749 tgaggaaatgaggttctatttggcctttaaaaagacacgcagcgtgagttaactcacgcagaattaacacatg 7414821  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 479
Target Start/End: Complemental strand, 48582171 - 48582108
Alignment:
Q  416 tcacgccagaggcatttttggaagtttggttgtgagtgaggaaaacttgttggaagaagagcat 479  Q
    ||||| ||| || ||||||||||||||||||| ||||||| ||| ||| |||||||||||||||    
T  48582171 tcacgtcagtggtatttttggaagtttggttgggagtgagcaaatcttattggaagaagagcat 48582108  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 31266876 - 31266820
Alignment:
Q  333 aaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaact 389  Q
    |||||||||||||| ||| |||||||| ||||||| ||||| ||| || ||||||||    
T  31266876 aaatgaggaaatgaagttttgtctgacttttaaaaggacacacagtgtgagttaact 31266820  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 416
Target Start/End: Original strand, 15798823 - 15798905
Alignment:
Q  333 aaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactcatgcaagattaacacatgcatgagtt 416  Q
    |||||||||||| |||||||||||| |||||||||  ||||||| ||| |||||| ||| |||| ||||||||  |||||||||    
T  15798823 aaatgaggaaataaggttatgtctg-cctttaaaataacacgcaacgtgagttaagtcacgcaaaattaacactagcatgagtt 15798905  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 480
Target Start/End: Complemental strand, 28717405 - 28717351
Alignment:
Q  426 ggcatttttggaagtttggttgtgagtgaggaaaacttgttggaagaagagcatt 480  Q
    |||| ||||| ||||||||||| ||||||| |||||||||||| |||||| ||||    
T  28717405 ggcacttttgaaagtttggttgggagtgagcaaaacttgttgggagaagatcatt 28717351  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 391
Target Start/End: Complemental strand, 42420508 - 42420450
Alignment:
Q  333 aaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactca 391  Q
    ||||||| ||||  |||| |||||||||||||||| |||||||||||| ||||||||||    
T  42420508 aaatgagaaaatagggttctgtctgacctttaaaacgacacgcagcgtgagttaactca 42420450  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 477
Target Start/End: Complemental strand, 9944619 - 9944470
Alignment:
Q  332 aaaatgaggaaatgaggttatgtctgacctttaaaaagacacgcagcgtaagttaactcatgcaagattaacacatgcatgagtt----cacgccagagg 427  Q
    |||||||| |||||||||| || ||| |||| ||||  ||||||||||| || ||||||  ||| ||||||||||||  ||||||    |||| ||| ||    
T  9944619 aaaatgagaaaatgaggttctgcctggccttgaaaacaacacgcagcgtgagctaactcgcgcaggattaacacatgtgtgagttaacccacgtcagggg 9944520  T
Q  428 catttttggaagtttggttgtgagtgaggaaaacttgttggaagaagagc 477  Q
    | |||| | |||||||||||  | |||| |||||||||||  ||||||||    
T  9944519 ctttttcgaaagtttggttggaaatgagcaaaacttgttgagagaagagc 9944470  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 463
Target Start/End: Original strand, 30202034 - 30202071
Alignment:
Q  426 ggcatttttggaagtttggttgtgagtgaggaaaactt 463  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  30202034 ggcatttttggaagtttggttgggagtgagcaaaactt 30202071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 1639458 - 1639510
Alignment:
Q  428 catttttggaagtttggttgtgagtgaggaaaacttgttggaagaagagcatt 480  Q
    ||||||||||||||| ||||    |||| ||||||||||||||||||||||||    
T  1639458 catttttggaagtttagttggatctgagtaaaacttgttggaagaagagcatt 1639510  T

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