View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19741_low_3 (Length: 419)
Name: NF19741_low_3
Description: NF19741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19741_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 46143981 - 46144372
Alignment:
| Q |
18 |
actagacggttttaggatcctatgatgagttttaatttaccatcttgaacaaattttgtgatttatctactcaaatcattatgaataatgtagaagaggg |
117 |
Q |
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| T |
46143981 |
actagacggttttaggatcctatgatgagttataatttaccatcttgaacaaattttgtgattcatctactcaaatcattatgaataatgtagaagaggg |
46144080 |
T |
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| Q |
118 |
gaggtgacaatgcatactcttaagattatttgaatccaatgagaannnnnnngcattgacctataacatttttaaaagaaatggccaa--tcaagagtat |
215 |
Q |
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| T |
46144081 |
gaggtgacaatgcatactct-aagattatttgaatccaatgagaatttttttgcattgacctataacatttttaaaagaaatggccaaaatcaggagtat |
46144179 |
T |
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| Q |
216 |
catagccgttagctacaacaattttgaaagcaagattatctccaaaaaatttcttgtgcaacaagttaatggcttcaaaagttaagcaaatataatcccc |
315 |
Q |
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| T |
46144180 |
catagccgttagctacaacaattttgaaagcaagattatctccaaaaaaattcttgtgcaacaagttaatggcttcaaaagttaagcaaatataatcccc |
46144279 |
T |
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| Q |
316 |
tataagtaagcctttataaatccccttttagagatgacgtgagacataatcgtagcttcattttcttattaaataagtagccactagaattat |
408 |
Q |
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| T |
46144280 |
tataagtaagcctttataaatccccttttagagatgacgtgagacataatcgtagcttcattttcttattaaataagtagccactagaattat |
46144372 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 22213754 - 22213666
Alignment:
| Q |
196 |
aaatggccaatcaagagtatcatagccgttagctacaacaattttgaaagcaagattatctccaaaaaatttcttgtgcaacaagttaa |
284 |
Q |
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| T |
22213754 |
aaatggccactcaagagtatcataggctttagagatatctatcttgaaagcaatattacctccataagatttcttctgtaacaagttaa |
22213666 |
T |
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