View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19741_low_5 (Length: 366)
Name: NF19741_low_5
Description: NF19741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19741_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 180 - 353
Target Start/End: Complemental strand, 45414898 - 45414725
Alignment:
| Q |
180 |
ttaccaaaagtttagcacataattactatgannnnnnnaatagtaatagtaatcaatatacattcgtatgtcacgatgaaagcaccactgctccaaatga |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45414898 |
ttaccaaaagtttagcacataattactatgatttttttaatcgtaatagtaatcaatatacattcgtatgtcacgatgaaagcaccactgctccaaatga |
45414799 |
T |
|
| Q |
280 |
cacataatatatgcggtgtatgagttaaaagaggaaggaccacaatacatagtaatcaagaatctaagctggat |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45414798 |
cacataatatatgcggtgtatgagttaaaagagaaaggaccacaatacatagtaatcaagaatctaagctggat |
45414725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 45415090 - 45414929
Alignment:
| Q |
20 |
gtgtgtgtcatgagatttaagaatgtgttcttctaaattttaagttcaaatactccagattccaacaattcttataacgagtaagtcttcacaagatttg |
119 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45415090 |
gtgtgtgtcgtgagatctaagaatgtgttcttctaaattttaagttcaaatactccaggttccgacaattcttataatgagtaagtcttcacaagatttg |
45414991 |
T |
|
| Q |
120 |
ctctaccttgaagtgaacctcgttagtggatagagattgatcaaccggatcagttgaacttt |
181 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45414990 |
ctctaccttcaagtgaacctcgttagtggatagagattgatcaaccgaatcagttgaacttt |
45414929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University