View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_high_11 (Length: 462)
Name: NF19742_high_11
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_high_11 |
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| [»] scaffold0632 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 104 - 446
Target Start/End: Complemental strand, 36486218 - 36485876
Alignment:
| Q |
104 |
caacacatatcatctacaaactctcttcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttttgta |
203 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36486218 |
caacacatatcatctacaaactct--tcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttttgta |
36486121 |
T |
|
| Q |
204 |
agttgtagtgaaattaagctcattaattaataaatgaaaaaataccttgaaacatgagtgaagaagattctcaagttggagatggtggctgatgtagtgg |
303 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36486120 |
agttgtagtgaaattaagctcatgaattaataaatgaaaaaagaccttgaaacatgagtgaagaagattctcaagttggagatggtggctgatgtagtgg |
36486021 |
T |
|
| Q |
304 |
aggtaagtggccgtgatgatggaggttggaacacatccaaatctactgttatatttccaattcca--cacaaactttttcaccaacaattcccgacatta |
401 |
Q |
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||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36486020 |
aggtaagcggctgtgatgatagaggctggaacacatccaaatctactgttatatttccaattccacacacaaactttttcaccaacaattcccgacatta |
36485921 |
T |
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| Q |
402 |
ctattcttacacagctagcggtgctacatgtttcattgttctctt |
446 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36485920 |
ctattcttacatagctagcggtgctacatgtttcattgttctctt |
36485876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 104 - 446
Target Start/End: Complemental strand, 28539570 - 28539228
Alignment:
| Q |
104 |
caacacatatcatctacaaactctcttcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttttgta |
203 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28539570 |
caacacatatcatctacaaactct--tcactttcttgttctttttattctagtccattttcatgaagatatatactatataactgatcaaacgttttgta |
28539473 |
T |
|
| Q |
204 |
agttgtagtgaaattaagctcattaattaataaatgaaaaaataccttgaaacatgagtgaagaagattctcaagttggagatggtggctgatgtagtgg |
303 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28539472 |
agttgtagtgaaattaagctcatgaattaataaatgaaaaaagatcttgaaacatgagtgaagaagattctcaagttggagatggtggctgatgtactgg |
28539373 |
T |
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| Q |
304 |
aggtaagtggccgtgatgatggaggttggaacacatccaaatctactgttatatttccaattcca--cacaaactttttcaccaacaattcccgacatta |
401 |
Q |
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||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28539372 |
aggtaagcggccgtgatgatggaggctggaatacatccaaatctactgttatatttccaattccacacacaaactttttcaccaacaattcccgacatta |
28539273 |
T |
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| Q |
402 |
ctattcttacacagctagcggtgctacatgtttcattgttctctt |
446 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28539272 |
ctattcttacacagctagcggtgctgcatgtttcattgttctctt |
28539228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 104 - 446
Target Start/End: Original strand, 31600164 - 31600506
Alignment:
| Q |
104 |
caacacatatcatctacaaactctcttcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttttgta |
203 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31600164 |
caacacatatcatctacaaactct--tcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttctgta |
31600261 |
T |
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| Q |
204 |
agttgtagtgaaattaagctcattaattaataaatgaaaaaataccttgaaacatgagtgaagaagattctcaagttggagatggtggctgatgtagtgg |
303 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31600262 |
agttgtagtgaaattaagctcatgaattaataaatgaaaaaagaccttgaaacatgagtgaagaagattctcaagttggagatggtggctgatgtagtgg |
31600361 |
T |
|
| Q |
304 |
aggtaagtggccgtgatgatggaggttggaacacatccaaatctactgttatatttccaattc--cacacaaactttttcaccaacaattcccgacatta |
401 |
Q |
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||||||| | | |||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31600362 |
aggtaagcgtctgtgatgattgaggctggaacacatccaaatctactgttatatttccaattccacacacaaactttttcaccaacaattcccgacatta |
31600461 |
T |
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| Q |
402 |
ctattcttacacagctagcggtgctacatgtttcattgttctctt |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31600462 |
ctattcttacacagctagcggtgctacatgtttcattgttctctt |
31600506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 152 - 446
Target Start/End: Complemental strand, 957139 - 956847
Alignment:
| Q |
152 |
ctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaagttgtagtgaaattaagctcattaattaataaatgaaaaaatacctt |
251 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| ||| ||| ||||||| ||||| |
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| T |
957139 |
ctagtccattttcatgaagatataaactagataactgatcaaattttttgtaagttgtagtgaaattaagctcatgaat----aaacgaaaaaagacctt |
957044 |
T |
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| Q |
252 |
gaaacatgagtgaagaagattctcaagttggagatggtggctgatgtagtggaggtaagtggccgtgatgatggaggttggaacacatccaaatctactg |
351 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || | ||||||||||||||||| |
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| T |
957043 |
gaaacaggagtgaagaagagcctcaagttggagatggtggctgatgtagcggaggtaagcggccgtgatgatggaggctgtagcacatccaaatctactg |
956944 |
T |
|
| Q |
352 |
t----tatatttccaattc--cacacaaactttttcaccaacaattcccgacattactattcttacacagctagcggtgctacatgtttcattgttctct |
445 |
Q |
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| | |||||||||||| ||||||||||||||||||| ||||||| |||| || |||| |||| |||||| |||||||||||| |||||||||| |
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| T |
956943 |
tagtatttatttccaattccacacacaaactttttcaccatcaattcctgacactattattgttacgcagcta----tgctacatgttttattgttctct |
956848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: scaffold0632
Description:
Target: scaffold0632; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 152 - 305
Target Start/End: Complemental strand, 2672 - 2518
Alignment:
| Q |
152 |
ctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaagttgtagtgaaattaagctcattaattaataaatgaa-aaaatacct |
250 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |
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| T |
2672 |
ctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaagttgtagtgaaattaagctcatgaattaataaatgaaaaaaagacct |
2573 |
T |
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| Q |
251 |
tgaaacatgagtgaagaagattctcaagttggagatggtggctgatgtagtggag |
305 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
2572 |
tgaaacatgagtgaagaagatcctcaagttggaaatggtggctgatgtagtggag |
2518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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