View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_high_12 (Length: 458)
Name: NF19742_high_12
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Original strand, 1900858 - 1901281
Alignment:
| Q |
16 |
atccatccattaagatgtacgtatgaatagaatctactcaaatgactctcccttggcaagtggttaatatggggtatagggaatgaaagaaaaactgtgc |
115 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1900858 |
atccatccattaagatgtacgtatgaatagactctactcaaatgactctcccttggcaagtggttaatatggggtatagggaatgaaagaaaaactgtgc |
1900957 |
T |
|
| Q |
116 |
tacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcatttaagtggtttggttttttcccaccga |
215 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1900958 |
tacggatgtctgtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcatttaagtggtttggttttttcccaccga |
1901057 |
T |
|
| Q |
216 |
taactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattttttctaccgctttgatttgttgattcag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1901058 |
taactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattttttctaccgctttgatttgttgattcag |
1901157 |
T |
|
| Q |
316 |
gagattaaaataaaaagtagttttgctagaataactgttacaaaacccaaaaagaaaacaaacaatggaaacagttactagtatgtcataccttgagcag |
415 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1901158 |
gagattaaaataaaaagtagttttgctaaaataactgttacaaaacccaaaaagaaaacaaacaatggaaacagttactagtacgtcataccttgagcag |
1901257 |
T |
|
| Q |
416 |
ttggtcagcatggcaaggtaactg |
439 |
Q |
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|||||||||||||||||||||||| |
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| T |
1901258 |
ttggtcagcatggcaaggtaactg |
1901281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Original strand, 1910304 - 1910727
Alignment:
| Q |
16 |
atccatccattaagatgtacgtatgaatagaatctactcaaatgactctcccttggcaagtggttaatatggggtatagggaatgaaagaaaaactgtgc |
115 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1910304 |
atccatccattaagatgtacgtatgaatagactctactcaaatgactctcccttggcaagtggttaatatggggtatagggaatgaaagaaaaactgtgc |
1910403 |
T |
|
| Q |
116 |
tacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcatttaagtggtttggttttttcccaccga |
215 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1910404 |
tacggatgtctgtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcatttaagtggtttggttttttcccaccga |
1910503 |
T |
|
| Q |
216 |
taactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattttttctaccgctttgatttgttgattcag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1910504 |
taactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattttttctaccgctttgatttgttgattcag |
1910603 |
T |
|
| Q |
316 |
gagattaaaataaaaagtagttttgctagaataactgttacaaaacccaaaaagaaaacaaacaatggaaacagttactagtatgtcataccttgagcag |
415 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1910604 |
gagattaaaataaaaagtagttttgctaaaataactgttacaaaacccaaaaagaaaacaaacaatggaaacagttactagtacgtcataccttgagcag |
1910703 |
T |
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| Q |
416 |
ttggtcagcatggcaaggtaactg |
439 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
1910704 |
ttggtcagcatggcaaggtaactg |
1910727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 89 - 352
Target Start/End: Original strand, 1894058 - 1894322
Alignment:
| Q |
89 |
gtatagggaatgaaagaaaaactgtgctacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcat |
188 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||||| ||||| ||||||||||| |||||| || |
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| T |
1894058 |
gtatagggaatgaaagaaaaactgtgctatggatgtggttattatggggtaccaaagtcctacgatgagtagtatgttaatgtgatgctcagtgtagtat |
1894157 |
T |
|
| Q |
189 |
ttaagtggtttggtttttt-cccaccgataactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattt |
287 |
Q |
| |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
1894158 |
ttaagtggtttggttttttccccactgataactagcttttaaaggaagattatttcccaagcgctcaaatgcatgtcaaaatgcaaccttgtattta-tt |
1894256 |
T |
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| Q |
288 |
tttctaccgctttgatttgttgattcaggaga-ttaaaataaaaagtagttttgctagaataactg |
352 |
Q |
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|||||||| ||||||||| || || | || | |||||||||||||||||| ||||| |||||||| |
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| T |
1894257 |
tttctaccaatttgatttgctgcttaatgaaatttaaaataaaaagtagttatgctaaaataactg |
1894322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 89 - 352
Target Start/End: Original strand, 1903504 - 1903768
Alignment:
| Q |
89 |
gtatagggaatgaaagaaaaactgtgctacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcat |
188 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||||| ||||| ||||||||||| |||||| || |
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| T |
1903504 |
gtatagggaatgaaagaaaaactgtgctatggatgtggttattatggggtaccaaagtcctacgatgagtagtatgttaatgtgatgctcagtgtagtat |
1903603 |
T |
|
| Q |
189 |
ttaagtggtttggtttttt-cccaccgataactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattt |
287 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
1903604 |
ttaagtggtttggttttttccccactgataactagcttttaaaggaagattatttcccaagcgctcaaatgcatgtcaaaatgcaaccttgtattta-tt |
1903702 |
T |
|
| Q |
288 |
tttctaccgctttgatttgttgattcaggaga-ttaaaataaaaagtagttttgctagaataactg |
352 |
Q |
| |
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|||||||| ||||||||| || || | || | |||||||||||||||||| ||||| |||||||| |
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| T |
1903703 |
tttctaccaatttgatttgctgcttaatgaaatttaaaataaaaagtagttatgctaaaataactg |
1903768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 365 - 439
Target Start/End: Original strand, 1894363 - 1894437
Alignment:
| Q |
365 |
aaaagaaaacaaacaatggaaacagttactagtatgtcataccttgagcagttggtcagcatggcaaggtaactg |
439 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1894363 |
aaaagaaaacaaacaaaggaaacagttactagtatgtcataccttgagcagttggtcagcatggcaaggtaactg |
1894437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 365 - 439
Target Start/End: Original strand, 1903809 - 1903883
Alignment:
| Q |
365 |
aaaagaaaacaaacaatggaaacagttactagtatgtcataccttgagcagttggtcagcatggcaaggtaactg |
439 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1903809 |
aaaagaaaacaaacaaaggaaacagttactagtatgtcataccttgagcagttggtcagcatggcaaggtaactg |
1903883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 1893956 - 1894016
Alignment:
| Q |
16 |
atccatccattaagatgtacgtatgaatagaatctactcaaatgactctcccttggcaagt |
76 |
Q |
| |
|
|||||||||||||| | ||| || ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
1893956 |
atccatccattaagttatacatacgaatagactctactcaaatgactctcccttggcaagt |
1894016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 1903402 - 1903462
Alignment:
| Q |
16 |
atccatccattaagatgtacgtatgaatagaatctactcaaatgactctcccttggcaagt |
76 |
Q |
| |
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|||||||||||||| | ||| || ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
1903402 |
atccatccattaagttatacatacgaatagactctactcaaatgactctcccttggcaagt |
1903462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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