View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19742_high_17 (Length: 380)
Name: NF19742_high_17
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 15592995 - 15592779
Alignment:
| Q |
17 |
aaaaaacaaattacaagaagaagaaaaaattgtgatatttatctcttccttcaatgcaaaaacaacaaacacatatacaacccgcagtaatcatcatgtc |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15592995 |
aaaaaaaaaattacaagaagaagaaaaaattgtgatatttatctcttccttcaatgcaaaaacaacaaacacatatacaacccgcagtaatcatcatgtc |
15592896 |
T |
|
| Q |
117 |
ctcttcatcattattattattctctcactgtcatcatcactacggcatcttctacctcccaccaaccgcaccaaagccatcatccatctctaataaggtc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15592895 |
ctcttcatcattattattattctctcactgtcatcatcactacggcatcttctacctcccaccaaccgcaccaaagccatcatccatctctaataaggtc |
15592796 |
T |
|
| Q |
217 |
aataccaaaacaattac |
233 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
15592795 |
aataccaaaacaattac |
15592779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 46 - 233
Target Start/End: Original strand, 15681915 - 15682114
Alignment:
| Q |
46 |
ttgtgatatttatctcttccttcaatgcaaaaacaacaaacacatatacaacccgcagtaatcatcatgtcctcttca------------tcattattat |
133 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||| |
|
|
| T |
15681915 |
ttgtgatttttatctctttattcgatgcaaaaacaacaaacacatatacaacctggagtaatcatcatgtcctcttctctcttcctcccttcattattat |
15682014 |
T |
|
| Q |
134 |
tattctctcactgtcatcatcactacggcatcttctacctcccaccaaccgcaccaaagccatcatccatctctaataaggtcaataccaaaacaattac |
233 |
Q |
| |
|
||||||| |||| |||||||||| || |||||| |||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |
|
|
| T |
15682015 |
tattctcacactttcatcatcaccaccgcatctcttacctcccaccaaccgcaccaaagccatcatcaatatctaataaggtcagcaccaaaacaattac |
15682114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 15592711 - 15592640
Alignment:
| Q |
301 |
ccctagcttagcttccaagggtgatatcttctattttcttgcttatcaatatcatcatgctactttcttctc |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15592711 |
ccctagcttagcttccaagggtgatatcttctattttcttgcttatcaatatcatcatgctactttcttctc |
15592640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University