View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19742_high_25 (Length: 279)

Name: NF19742_high_25
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19742_high_25
NF19742_high_25
[»] chr8 (3 HSPs)
chr8 (1-266)||(14791098-14791363)
chr8 (1-266)||(20111721-20111983)
chr8 (2-36)||(20112145-20112179)
[»] chr5 (11 HSPs)
chr5 (1-266)||(5348144-5348409)
chr5 (1-277)||(36429699-36429975)
chr5 (77-251)||(26380135-26380321)
chr5 (2-47)||(29500575-29500620)
chr5 (1-47)||(7491477-7491523)
chr5 (1-47)||(14278555-14278601)
chr5 (1-39)||(31808508-31808546)
chr5 (2-35)||(29500239-29500272)
chr5 (2-34)||(36429513-36429545)
chr5 (7-43)||(7493127-7493164)
chr5 (2-31)||(36681722-36681751)
[»] chr3 (7 HSPs)
chr3 (1-266)||(54560454-54560719)
chr3 (1-266)||(50837687-50837956)
chr3 (1-266)||(47471121-47471386)
chr3 (1-47)||(35942651-35942697)
chr3 (2-47)||(35942333-35942378)
chr3 (2-36)||(47470925-47470959)
chr3 (4-38)||(50838125-50838159)
[»] chr2 (6 HSPs)
chr2 (1-263)||(4593043-4593305)
chr2 (1-266)||(10256125-10256393)
chr2 (1-47)||(33003113-33003159)
chr2 (2-36)||(10255900-10255934)
chr2 (1-38)||(33003597-33003634)
chr2 (2-42)||(45114650-45114691)
[»] chr6 (7 HSPs)
chr6 (1-266)||(17732245-17732513)
chr6 (1-266)||(30709921-30710189)
chr6 (21-266)||(15347853-15348098)
chr6 (1-266)||(6008867-6009126)
chr6 (2-38)||(6009296-6009332)
chr6 (2-38)||(17732684-17732720)
chr6 (2-44)||(18749025-18749067)
[»] scaffold0102 (2 HSPs)
scaffold0102 (1-266)||(32780-33048)
scaffold0102 (2-36)||(32583-32617)
[»] chr4 (8 HSPs)
chr4 (1-266)||(27455348-27455616)
chr4 (1-266)||(49681487-49681761)
chr4 (2-47)||(21224481-21224526)
chr4 (2-47)||(21226032-21226077)
chr4 (1-35)||(21225014-21225048)
chr4 (1-35)||(21226405-21226439)
chr4 (2-36)||(27455149-27455183)
chr4 (2-38)||(49681901-49681937)
[»] chr1 (6 HSPs)
chr1 (1-266)||(47445211-47445479)
chr1 (1-47)||(27585855-27585901)
chr1 (1-47)||(36475833-36475879)
chr1 (2-47)||(27585529-27585574)
chr1 (2-38)||(36475511-36475547)
chr1 (2-38)||(47445643-47445679)
[»] chr7 (6 HSPs)
chr7 (1-266)||(36067743-36068011)
chr7 (3-47)||(3986751-3986795)
chr7 (2-46)||(32390667-32390712)
chr7 (2-38)||(3987107-3987143)
chr7 (2-34)||(30480579-30480611)
chr7 (2-35)||(36067525-36067558)
[»] scaffold0169 (1 HSPs)
scaffold0169 (2-46)||(26997-27042)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 14791363 - 14791098
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14791363 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 14791264  T
Q  101 atcaagagacaattgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattctga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14791263 atcaagagacaattgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgattctga 14791164  T
Q  201 agaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14791163 agaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 14791098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 20111721 - 20111983
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    |||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20111721 attaagaaacaacaacgattaacaacatc---atcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtggcagaaag 20111817  T
Q  101 atcaagagacaattgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattctga 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||    
T  20111818 atcaagagacaattgatgatgatcattgttgttggtaatctcatcgctgctccaaaaagaaaatccatttgaatgagggttaaaaagtgattgattttga 20111917  T
Q  201 agaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  20111918 agatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccgttgttgttgatg 20111983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 20112179 - 20112145
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatca 36  Q
    |||||||||||||||||||||||||||||||||||    
T  20112179 ttaagaaacaacaaccattaacaacatcatcatca 20112145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 5348409 - 5348144
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5348409 attaagaaacaacaaccattaacaacatcatcatcatctcattacaagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 5348310  T
Q  101 atcaagagacaattgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattctga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5348309 atcaagagacaattgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgattctga 5348210  T
Q  201 agaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5348209 agaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 5348144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 36429975 - 36429699
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  36429975 attaagaaacagcaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgtt---atccaaaagggtcgtagcagaaag 36429879  T
Q  101 atcaagagacaattgatgatgat---cattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattc 197  Q
    |||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  36429878 atcaagagacaattgatgatgatgatcattgttgttggtaatctcatcgctgctccaaaaaagaaatccatttgaatgagggttaaaaagtgattgattc 36429779  T
Q  198 tgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatgatgatgtccat 277  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || |||||||    
T  36429778 tgaagaggagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccgttgctgttgatgttgttgtccat 36429699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 77 - 251
Target Start/End: Complemental strand, 26380321 - 26380135
Alignment:
Q  77 atccaaaagggtcgtagcagaaagatcaagagacaattgatgatgat------cattgttgttgataatctcatcgctgctccaaaaaggaaatccattt 170  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||      ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  26380321 atccaaaagggtcattgcagagagatcaagagacaattgatgatgatgatgatcattgttattgataatctcatcgctgctccaaaaaggaaacccattt 26380222  T
Q  171 gaatgag------ggttaaaaattgattgattctgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaa 251  Q
    |||||||      ||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  26380221 gaatgagcctgagggttaaagattgattgattctgaagatgagacatgagtgatgatggaacagtaacatcatgagaatgagaagaa 26380135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 29500620 - 29500575
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatcatctcattacta 47  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  29500620 ttaagaaataacaaccattaacaacatcatcatcatctcattacta 29500575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7491477 - 7491523
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattacta 47  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||    
T  7491477 attaagaaacaataaccattaacaacatcatcatcatcttattacta 7491523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 14278601 - 14278555
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattacta 47  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14278601 attaagaaacaacaatcatcaacaacatcatcatcatctcattacta 14278555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 31808508 - 31808546
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatct 39  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  31808508 attaagatacaacaaccattaacaacatcatcatcatct 31808546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 29500239 - 29500272
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatc 35  Q
    ||||||||||||||||||||||||||||||||||    
T  29500239 ttaagaaacaacaaccattaacaacatcatcatc 29500272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 36429513 - 36429545
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcat 34  Q
    |||||||||||||||||||||||||||||||||    
T  36429513 ttaagaaacaacaaccattaacaacatcatcat 36429545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 7493164 - 7493127
Alignment:
Q  7 aaacaacaaccattaacaacatcat-catcatctcatt 43  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  7493164 aaacaacaaccattaacaacatcatccatcatctcatt 7493127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 36681751 - 36681722
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcat 31  Q
    ||||||||||||||||||||||||||||||    
T  36681751 ttaagaaacaacaaccattaacaacatcat 36681722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 54560719 - 54560454
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54560719 attaagaaacaacaaccattaacaacatcatcatcatctcattacaagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 54560620  T
Q  101 atcaagagacaattgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattctga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  54560619 atcaagagacaattgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgattatga 54560520  T
Q  201 agaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54560519 agaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 54560454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 50837687 - 50837956
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50837687 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 50837786  T
Q  101 atcaagagacaat---tgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatga-gggttaaaaattgattgatt 196  Q
    |||||||||||||   |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  50837787 atcaagagacaattgatgatgatgatcagtgttgttgataatttcatcgctgctccaaaaaggaaatccatttgaatgaggggttaaaaagtgattgatt 50837886  T
Q  197 ctgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50837887 ctgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgctgttgatg 50837956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 47471386 - 47471121
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47471386 attaagaaacaacaaccattaaca---tcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 47471290  T
Q  101 atcaagagacaattgatgatgat---cattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattc 197  Q
    |||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47471289 atcaagagacaattgatgatgatgatcattgttgttggtaatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgattc 47471190  T
Q  198 tgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  47471189 tgaagaggagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccgttgatgttgatg 47471121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35942697 - 35942651
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattacta 47  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  35942697 attaagaaacaacaaccattaacaacatcaccatcatctcattacta 35942651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 35942333 - 35942378
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatcatctcattacta 47  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  35942333 ttaagaagcaacaactattaacaacatcatcatcatctcattacta 35942378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 47470925 - 47470959
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatca 36  Q
    |||||||||||||||||||||||||||||||||||    
T  47470925 ttaagaaacaacaaccattaacaacatcatcatca 47470959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 50838159 - 50838125
Alignment:
Q  4 aagaaacaacaaccattaacaacatcatcatcatc 38  Q
    |||||||||||||||||||||||| ||||||||||    
T  50838159 aagaaacaacaaccattaacaacaacatcatcatc 50838125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 4593305 - 4593043
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4593305 attaagaaacaacaaccattaacaacatcatcatcatctcattacaagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 4593206  T
Q  101 atcaagagacaattgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattctga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||    
T  4593205 atcaagagacaattgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattatga 4593106  T
Q  201 agaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4593105 agaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttg 4593043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 10256393 - 10256125
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10256393 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 10256294  T
Q  101 atcaagagacaattgatga---tgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattc 197  Q
    |||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||    
T  10256293 atcaagagacaattgatgatgatgatcattgttgttggtaatctcatcgctgctccaaaatggaaatccatttgaatgagggttagaaagtgattgattc 10256194  T
Q  198 tgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  10256193 tcaagaggagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccgttgctgttgatg 10256125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33003113 - 33003159
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattacta 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33003113 attaagaaacaacaaccattaacaacatcatcatcatctcattacta 33003159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 10255900 - 10255934
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatca 36  Q
    |||||||||||||||||||||||||||||||||||    
T  10255900 ttaagaaacaacaaccattaacaacatcatcatca 10255934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33003634 - 33003597
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatc 38  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  33003634 attaagaaacaacaatcattatcaacatcatcatcatc 33003597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 45114691 - 45114650
Alignment:
Q  2 ttaagaaacaacaacc-attaacaacatcatcatcatctcat 42  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  45114691 ttaagaaacaacaacctatcaacaacatcatcatcatctcat 45114650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 17732245 - 17732513
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17732245 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 17732344  T
Q  101 atcaagagacaattgat---gatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattc 197  Q
    |||||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17732345 atcaagagacaattgatgatgatgatcagtgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgattc 17732444  T
Q  198 tgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17732445 tgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgctgttgatg 17732513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 30710189 - 30709921
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30710189 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 30710090  T
Q  101 atcaagagacaattgatgatgat---cattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattc 197  Q
    |||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  30710089 atcaagagacaattgatgatgatgatcattgttgttggtaatctcatcgctgctccaaaaaagaaatccatttgaatgagggttaaaaagtgattgattc 30709990  T
Q  198 tgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  30709989 tgaagaggagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccgttgctgttgatg 30709921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 266
Target Start/End: Complemental strand, 15348098 - 15347853
Alignment:
Q  21 aacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348098 aacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgat 15347999  T
Q  121 gatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattctgaagaggagacatgagtgatga 220  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  15347998 gatcattgttgttgataatctcatcgctgctccaaaatggaaatccatttgaatgagggttaaaaagtgattgattctaaagaggagacatgagtgatga 15347899  T
Q  221 tggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  15347898 tggaacaataatatcatgagaatgagaagaaacgttgatgttgatg 15347853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 6008867 - 6009126
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6008867 attaagaaacaacaaccattaaca---tcatcatcatctcattactagcttctcttgtttgttgctcattattgttatccaaaagggtcgtagcagaaag 6008963  T
Q  101 atcaagagacaattgat---gatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattc 197  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  6008964 atcaagagacaattgatgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttcaaaagtgattgattc 6009063  T
Q  198 tgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    ||||||||||||||||||||||||||||||||      |||||||||||||||||| ||||||||||||    
T  6009064 tgaagaggagacatgagtgatgatggaacaat------atgagaatgagaagaaacattgatgttgatg 6009126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 6009332 - 6009296
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatcatc 38  Q
    |||||||||||||||||||||||||| ||||||||||    
T  6009332 ttaagaaacaacaaccattaacaacaacatcatcatc 6009296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 17732720 - 17732684
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatcatc 38  Q
    |||||||||||||||||||||||||| ||||||||||    
T  17732720 ttaagaaacaacaaccattaacaacaacatcatcatc 17732684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 18749025 - 18749067
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatcatctcatta 44  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||    
T  18749025 ttaagaaacaacaatcatcaacaacaacatcatcatctcatta 18749067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 33048 - 32780
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33048 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 32949  T
Q  101 atcaagagacaattgatgatgat---cattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattc 197  Q
    |||||||||||||||||||||||   ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32948 atcaagagacaattgatgatgatgatcattgttgttggtaatctcatcactgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgattc 32849  T
Q  198 tgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  32848 tgaaaaggagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccgttgctgttgatg 32780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 32583 - 32617
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatca 36  Q
    |||||||||||||||||||||||||||||||||||    
T  32583 ttaagaaacaacaaccattaacaacatcatcatca 32617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 27455616 - 27455348
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27455616 attaagaaacaacaaccattaacaacatcatcatcatctcattactaacttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 27455517  T
Q  101 atcaagagacaattgatgatgat---cattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattc 197  Q
    |||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  27455516 atcaagagacaattgatgatgatgatcattgttgttggtaatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgatttattc 27455417  T
Q  198 tgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  27455416 tgaagaggagacatgagtgatgatggaacagtaacatcatgagaatgagaagaaccgttgttgttgatg 27455348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 49681487 - 49681761
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||    
T  49681487 attaagaaacaacaaccattaacaacatcattatcatctcattactagcttctcttgtttgttgatcattgttgttatccaaaagggtcgtagc-taaag 49681585  T
Q  101 atcaagagacaat---tgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattc 197  Q
    ||  |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  49681586 atatagagacaattgatgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaacccatttgaatgagggttaaaaagtgattgattc 49681685  T
Q  198 tgaaga-ggagacatg------agtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    | ||||   |||||||      ||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  49681686 taaagattaagacatgctattcagtgatgatggaacagtaacatcatgagaatgagaagaatcgttgttgttgatg 49681761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 21224481 - 21224526
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatcatctcattacta 47  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21224481 ttaagaaacaacaaccattaacaacatcatcatcatctcattacta 21224526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 21226032 - 21226077
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatcatctcattacta 47  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  21226032 ttaagaaacaacaaccattaaaaacatcatcatcaactcattacta 21226077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21225048 - 21225014
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21225048 attaagaaacaacaaccattaacaacatcatcatc 21225014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21226439 - 21226405
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21226439 attaagaaacaacaaccattaacaacatcatcatc 21226405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 27455149 - 27455183
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatca 36  Q
    |||||||||||||||||||||||||||||||||||    
T  27455149 ttaagaaacaacaaccattaacaacatcatcatca 27455183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 49681937 - 49681901
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatcatc 38  Q
    |||||||||||||||||||||||||| ||||||||||    
T  49681937 ttaagaaacaacaaccattaacaacaacatcatcatc 49681901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 47445211 - 47445479
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47445211 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttattcaaaagggtcgtagcagaaag 47445310  T
Q  101 atcaagagacaatt---gatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattc 197  Q
    ||||||||||||||   |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47445311 atcaagagacaatttatgatgatgatcattgttgttggtaatctcatcgttgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgattc 47445410  T
Q  198 tgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  47445411 tgaagaggagacatgagtggtgatggaacagtaacatcatgagaatgagaagaaccgttgctgttgatg 47445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27585901 - 27585855
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattacta 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27585901 attaagaaacaacaaccattaacaacatcatcatcatctcattacta 27585855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36475879 - 36475833
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattacta 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36475879 attaagaaacaacaaccattaacaacatcatcatcatctcattacta 36475833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 27585529 - 27585574
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatcatctcattacta 47  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  27585529 ttaagaaacaataaccattaacaacatcatcatcatcccattacta 27585574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 36475511 - 36475547
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatcatc 38  Q
    |||||||||||||||||||||||||||||||||||||    
T  36475511 ttaagaaacaacaaccattaacaacatcatcatcatc 36475547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 47445679 - 47445643
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatcatc 38  Q
    |||||||||||||||||||||||||| ||||||||||    
T  47445679 ttaagaaacaacaaccattaacaacaacatcatcatc 47445643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 36068011 - 36067743
Alignment:
Q  1 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36068011 attaagaaacaacaaccattaacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaag 36067912  T
Q  101 atcaagagacaattgatga---tgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaattgattgattc 197  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||     
T  36067911 atcaagagacaattgatgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagagttaaaaagtgattgattt 36067812  T
Q  198 tgaagaggagacatgagtgatgatggaacaataacatcatgagaatgagaagaaacgttgatgttgatg 266  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||  ||||||||    
T  36067811 tgaagaggagacatgagttacgatggaacagtaacatcatgagaatgagaagaaccgttattgttgatg 36067743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 3986751 - 3986795
Alignment:
Q  3 taagaaacaacaaccattaacaacatcatcatcatctcattacta 47  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||    
T  3986751 taagaaacaacaatcattaacatcatcatcatcatctcattacta 3986795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 32390712 - 32390667
Alignment:
Q  2 ttaagaaacaacaacc-attaacaacatcatcatcatctcattact 46  Q
    |||||||||||||||| || ||||||||||||||||||||||||||    
T  32390712 ttaagaaacaacaacctatcaacaacatcatcatcatctcattact 32390667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 3987143 - 3987107
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatcatc 38  Q
    |||||||||||||||||||||||| ||||||||||||    
T  3987143 ttaagaaacaacaaccattaacaatatcatcatcatc 3987107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 30480611 - 30480579
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcat 34  Q
    |||||||||||||||||||||||||||||||||    
T  30480611 ttaagaaacaacaaccattaacaacatcatcat 30480579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 36067525 - 36067558
Alignment:
Q  2 ttaagaaacaacaaccattaacaacatcatcatc 35  Q
    |||||||||||||||||||||||||| |||||||    
T  36067525 ttaagaaacaacaaccattaacaacaacatcatc 36067558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 26997 - 27042
Alignment:
Q  2 ttaagaaacaacaacc-attaacaacatcatcatcatctcattact 46  Q
    |||||||||||||||| || ||||||||||||||||||||||||||    
T  26997 ttaagaaacaacaacctatcaacaacatcatcatcatctcattact 27042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University