View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_high_29 (Length: 253)
Name: NF19742_high_29
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 40325843 - 40326079
Alignment:
| Q |
1 |
aagtactcaaagttttttgatgtagttttatttatcaatgtgtcccaaaacccaaacataaaaaggattcaagatgaaattgctaacgtgttgaatctgg |
100 |
Q |
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| T |
40325843 |
aagtactccaagttttttgatgaagttttatttatcaatgtgtcccaaaacccaaacataaaaaggattcaagatgaaattgctaacgagttgaatctgg |
40325942 |
T |
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| Q |
101 |
aattcgacgtaaatactgaagctggaagaacaagaaaaatatacttgacattagcaaatatggatcaccaaattcttgtgatcttggatgatgtttcgga |
200 |
Q |
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| T |
40325943 |
aattcgacgtaaatactgaagctggaagaacaagaaaaatatacttgacattagcaaatatggatcgccaaattcttgtgatcttggatgatgtttcgga |
40326042 |
T |
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| Q |
201 |
aaatcttgatccagaaaaggtaggcattccttgtaat |
237 |
Q |
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| T |
40326043 |
aaatcttgatccagaaaaggtaggcattccttgtaat |
40326079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 40310576 - 40310799
Alignment:
| Q |
14 |
tttttgatgtagttttatttatcaatgtgtcccaaaacccaaacataaaaaggattcaagatgaaattgctaacgtgttgaatctggaattcgacgtaaa |
113 |
Q |
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| T |
40310576 |
tttttgctgcagttttatttatcactgtgtctcaaaatccaaatgtaaaacagattcaagatgaaatagctgactttttggatctcaaatttgacaaaaa |
40310675 |
T |
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| Q |
114 |
tactgaagctggaagaacaagaaaaatatacttgacattagcaaatatggatcaccaaattcttgtgatcttggatgatgtttcggaaaatcttgatcca |
213 |
Q |
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| T |
40310676 |
cactgaagttggaagagctagagaattatacttgacattagaaagcacagatcgtccaattcttgtgatcttggatgatgtttgggaaaatcttgatctt |
40310775 |
T |
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| Q |
214 |
gaaaaggtaggcattccttgtaat |
237 |
Q |
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| T |
40310776 |
gaggaattaggcattccttgtaat |
40310799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 26118819 - 26118783
Alignment:
| Q |
170 |
aaattcttgtgatcttggatgatgtttcggaaaatct |
206 |
Q |
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| T |
26118819 |
aaattcttgtgatcttggatgatgtgtgggaaaatct |
26118783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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