View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_high_3 (Length: 624)
Name: NF19742_high_3
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Complemental strand, 8758057 - 8757473
Alignment:
| Q |
18 |
aaaccaaaaagtttcttataccaaaaattctatcaaatcacttatatttctcttctcgcactctatcttacatatttctattttattgaatgatttttag |
117 |
Q |
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| T |
8758057 |
aaaccaaaaagtttcttataccaaaaattctatcaaatcacttatatttctcttctcgcactctatcttacatatttctattttattgaatgatttttag |
8757958 |
T |
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| Q |
118 |
taagccattttattttgttttgt-----cttaaccttctagtttaccggggaacagacacttgtaatccacaattcagtcaaaaggtaaataaaatttga |
212 |
Q |
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| T |
8757957 |
taagccattttgttttgttttgttttgtcttaaccttctagtttaccggg-aacagacacttgtaatccacaattaaatcaaaaggtaaaaaaaaattga |
8757859 |
T |
|
| Q |
213 |
tnnnnnnnnnttgttccaatcaaaatttgagtttaggttcttccgaccgatttgtccataactaacatactttaattagtcgagtgcaacctcttgattt |
312 |
Q |
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| T |
8757858 |
taaaaaaaa-ttgttcca-tcaaaatttgagtttaggttcttccgaccgatttgtccataattaacatactttaattagtcgagtgcaacctcttgattt |
8757761 |
T |
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| Q |
313 |
acaccatatttaaataacgtaatatctcaaatgataggtttaacgcaaaatcccctnnnnnnn-ggtttgacgcaagattttggaacccaagcaattgat |
411 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8757760 |
acaccatatttaaataacgtaacatctcaaatgataggtttaacgcaaaatcccctaaaaaaaaggtttgacgcaagattttggaacccaagcaattgat |
8757661 |
T |
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| Q |
412 |
aaaatatggctcctcaatgctcctctcagcaaaaaa-tgtatcacttcaatgaaatcttttccctgcgtatcttttcactcctcaatggattagtgtaga |
510 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8757660 |
aaaatatggctcctcaatgctcctctcagcaaaaaaatgtatcacttcaatgaaatcttttccctgcgtatcttttcactcctcaatggattagtgtaga |
8757561 |
T |
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| Q |
511 |
tggatttgtaaaacaatcaccatccagacttgtaaatccatattttcctaactaggtcttagatttgtaactatgctacataacataa |
598 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8757560 |
tgggtttgtaaaacaatcaccatccagacttgtaaatccatattttcctaactaggtcttagattcgtaactatgctacataacataa |
8757473 |
T |
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