View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19742_high_4 (Length: 607)

Name: NF19742_high_4
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19742_high_4
NF19742_high_4
[»] chr6 (5 HSPs)
chr6 (1-386)||(11947111-11947490)
chr6 (68-386)||(17716039-17716350)
chr6 (68-386)||(14667094-14667404)
chr6 (1-73)||(14666970-14667042)
chr6 (33-73)||(17715947-17715987)
[»] chr8 (6 HSPs)
chr8 (68-386)||(45349687-45349996)
chr8 (212-386)||(28245251-28245425)
chr8 (1-188)||(28245034-28245221)
chr8 (68-194)||(17630113-17630239)
chr8 (1-73)||(45349563-45349635)
chr8 (1-73)||(17629986-17630061)
[»] chr7 (1 HSPs)
chr7 (1-318)||(9238396-9238704)
[»] chr5 (6 HSPs)
chr5 (68-382)||(24046483-24046791)
chr5 (212-386)||(23758815-23758989)
chr5 (212-386)||(23824275-23824449)
chr5 (212-386)||(23758226-23758400)
chr5 (212-386)||(23823682-23823857)
chr5 (1-73)||(24046843-24046915)
[»] chr3 (7 HSPs)
chr3 (212-386)||(1658089-1658263)
chr3 (3-188)||(13851786-13851971)
chr3 (454-588)||(27832624-27832758)
chr3 (68-194)||(1658290-1658412)
chr3 (449-588)||(27827691-27827826)
chr3 (1-72)||(1658465-1658536)
chr3 (443-523)||(27845227-27845306)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 11947111 - 11947490
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgca 100  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11947111 tctcattccgttgagcttctcacggaactgaatctcaccgtcaagcttcacacttcaccaatcgagcttcacaaatcctttttcctctttcgctcacgca 11947210  T
Q  101 ggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagatcagtgcnnnnnn 200  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| | |||| ||  ||||||||||||||  ||||          
T  11947211 ggtaacactctcgaattcttcttcggtttggcatttttcgcgcattcggttttgatttcgct-agatttcatcgcaattatcttagattcgtgctttttt 11947309  T
Q  201 nnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaa 300  Q
               ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11947310 tttttc-----ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaa 11947404  T
Q  301 ttcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct 386  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  11947405 ttcttcttgttctgtttggcatttgtgatttataatttctttgaaattcatgtgttagatgttgccaaagaataagaaattatcct 11947490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 68 - 386
Target Start/End: Original strand, 17716039 - 17716350
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | || || ||||||||||||||||| ||    
T  17716039 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcgatttcacattttttgcgctttcggttttgatttcgcttagat 17716138  T
Q  168 tttataacaattatcttagatcagtgcnnnnnnnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctat 267  Q
    || ||  ||||||||||||||| ||||                 ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  17716139 ttcatcgcaattatcttagatccgtgcttttattttt-------ctgttatgaatcatctatttcgttcacattgtttgatttttgttttgaaattctat 17716231  T
Q  268 gtgtttgattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgcca 367  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17716232 gtgtttaattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttgaaattcatgtgtttgatgttgcca 17716331  T
Q  368 aagaataagaaattatcct 386  Q
    |||||||||||||||||||    
T  17716332 aagaataagaaattatcct 17716350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 68 - 386
Target Start/End: Original strand, 14667094 - 14667404
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||| ||    
T  14667094 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgctttcggtattgattttgcttagat 14667193  T
Q  168 tttataacaattatcttagatcagtgcnnnnnnnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctat 267  Q
    || ||  ||||||||||||||| ||||                 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||     
T  14667194 ttcatcgcaattatcttagatccgtgcttttttttt--------ctgttatgaatcatctatttcgttcacattgtttgatttttgttttgaaattctac 14667285  T
Q  268 gtgtttgattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgcca 367  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  14667286 gtgtttaattttcgtttcacaatttaactcaaattcttcttattctgtttggcatttgtgatttataatttctttgaaattcatgtctttgatgttgcca 14667385  T
Q  368 aagaataagaaattatcct 386  Q
    |||||||| ||||||||||    
T  14667386 aagaataacaaattatcct 14667404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 14666970 - 14667042
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  14666970 tctcattctgtcgagcttctcaccgaactgaatctcaccgtcgagcttcacacgtcatcgatcgagcttcaca 14667042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 17715947 - 17715987
Alignment:
Q  33 tctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17715947 tctcaccgtcgagcttcacacttcaccgatcgagcttcaca 17715987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 68 - 386
Target Start/End: Original strand, 45349687 - 45349996
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||    
T  45349687 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgcgcattcggttttgatttcgcttagat 45349786  T
Q  168 tttataacaattatcttagatcagtgcnnnnnnnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctat 267  Q
    || ||  ||||||||||||||| ||||                 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45349787 ttcatcgcaattatcttagatccgtgctttttttt---------ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattctat 45349877  T
Q  268 gtgtttgattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgcca 367  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45349878 gtgtttaattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttcttttaaattcatgtgtttgatgttgcca 45349977  T
Q  368 aagaataagaaattatcct 386  Q
    |||||||| ||||||||||    
T  45349978 aagaataacaaattatcct 45349996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 212 - 386
Target Start/End: Original strand, 28245251 - 28245425
Alignment:
Q  212 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 311  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28245251 ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt 28245350  T
Q  312 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct 386  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  28245351 ctgtttggcatttgtgatttataatttctttgaaattcatatgtttgatgttgccaaagaataagaaattatcct 28245425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 28245034 - 28245221
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28245034 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcactgatcgagcttcacaaatcctttttcctctttcgctcacgca 28245133  T
Q  101 ggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagat 188  Q
    ||||| |||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||| ||  ||||||||||||||    
T  28245134 ggtaaaactctcgaattcttcttcggtttcccatttttcgcgcattcggttttgatttcgcttagatttcatcgcaattatcttagat 28245221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 17630113 - 17630239
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| || ||||||||||||||||| ||    
T  17630113 ttcacaaatcctttttcccctttcgctcacacaggtaacactctcgaattcttcttctttttcgcatttttcgtgctttcggttttgatttcgcttagat 17630212  T
Q  168 tttataacaattatcttagatcagtgc 194  Q
    || |   |||||||||| |||| ||||    
T  17630213 ttcaccgcaattatctttgatccgtgc 17630239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45349563 - 45349635
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45349563 tctcatgccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccaatcgagcttcaca 45349635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17629986 - 17630061
Alignment:
Q  1 tctcattccgtcgagcttctcacgg---aactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    |||||||||||| |||||||||| |   |||||||||||| |||| |||||||||||||||||||| |||||||||    
T  17629986 tctcattccgtccagcttctcaccgtctaactgaatctcaacgtcaagcttcacacttcaccgatcaagcttcaca 17630061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 9238396 - 9238704
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  9238396 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcacggatagagcttcacaaatcctttttcctctttcgctcacgca 9238495  T
Q  101 ggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagatcagtgcnnnnnn 200  Q
    ||||| |  ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| ||  ||||||||||||||  ||||          
T  9238496 ggtaaaa--ctcgaattcttcttcggtttcgcatttttcgcgcattcggttttgatttcgcttagatttcatcgcaattatcttagattcgtgc------ 9238587  T
Q  201 nnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaa 300  Q
               |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9238588 ttttttttttcctgttatgaatcatct-tttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaa 9238686  T
Q  301 ttcttcttgttctgtttg 318  Q
    ||||||||||||||||||    
T  9238687 ttcttcttgttctgtttg 9238704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 175; Significance: 6e-94; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 68 - 382
Target Start/End: Complemental strand, 24046791 - 24046483
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  || || | |||| |||||||||| ||    
T  24046791 ttcataaatcctttttcctctttcgctcacgcaggtaacactctcgaattctttttcggtttcgcatttttcacgccttcgttttttatttcgcttagat 24046692  T
Q  168 tttataacaattatcttagatcagtgcnnnnnnnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctat 267  Q
    || ||  ||||||||||||||  ||||                 | ||||||||||||||||||| |||||||||||||| ||||||||||||||  |||    
T  24046691 ttcatcgcaattatcttagattcgtgcttttttttttt------cagttatgaatcatctatttcgttcacattgtttgatttttgttttgaaatgttat 24046598  T
Q  268 gtgtttgattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgcca 367  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24046597 gtgtttaattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttgaaattcatgtgtttgatgttgcca 24046498  T
Q  368 aagaataagaaatta 382  Q
    |||||||||||||||    
T  24046497 aagaataagaaatta 24046483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 212 - 386
Target Start/End: Original strand, 23758815 - 23758989
Alignment:
Q  212 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 311  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23758815 ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgatattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt 23758914  T
Q  312 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct 386  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  23758915 ctgttcggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaataagaaattgtcct 23758989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 212 - 386
Target Start/End: Original strand, 23824275 - 23824449
Alignment:
Q  212 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 311  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23824275 ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgatattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt 23824374  T
Q  312 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct 386  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  23824375 ctgttcggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaataagaaattgtcct 23824449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 212 - 386
Target Start/End: Original strand, 23758226 - 23758400
Alignment:
Q  212 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 311  Q
    ||||||||||||||||||||| |||||||||||| | |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  23758226 ctgttatgaatcatctatttcgttcacattgtttaattttttttttgaaattctatgtgtttaatttttgtttcacaatttaactcaaattcttcttgtt 23758325  T
Q  312 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct 386  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  23758326 ctgtttggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaataagaaattgtcct 23758400  T

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Target: chr5; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 212 - 386
Target Start/End: Original strand, 23823682 - 23823857
Alignment:
Q  212 ctgttatgaatcatctatttcattcacattgtttgaattttgtttt-gaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgt 310  Q
    ||||||||||||||||||||| |||||||||||| | |||| |||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  23823682 ctgttatgaatcatctatttcgttcacattgtttaatttttttttttgaaattctatgtgtttaatttttgtttcacaatttaactcaaattcttcttgt 23823781  T
Q  311 tctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct 386  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  23823782 tctgtttggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaataagaaattgtcct 23823857  T

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Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 24046915 - 24046843
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24046915 tctcattccgtcgagcttctcaccgaactgaatctcaccatcgagcttcacacttcaccgatcgagcttcaca 24046843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 212 - 386
Target Start/End: Complemental strand, 1658263 - 1658089
Alignment:
Q  212 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 311  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1658263 ctgttatgagtcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt 1658164  T
Q  312 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct 386  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1658163 ctgtttggcatttgtgatttataatttctttgaaattcatgtgtttgatgttgccaaagaataagaaattatcct 1658089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 13851971 - 13851786
Alignment:
Q  3 tcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgcagg 102  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13851971 tcattccgtcgagcttctcacggaactgaatctcaccgccgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgcagg 13851872  T
Q  103 taacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagat 188  Q
    |||||||||||||||||||||||||||| ||||||||| |||||  |||||||||||||||| |||| || |||||||||||||||    
T  13851871 taacactctcgaattcttcttcggtttcacatttttcgcgcattcagttttgatttcgcttagatttcatcacaattatcttagat 13851786  T

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Target: chr3; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 454 - 588
Target Start/End: Original strand, 27832624 - 27832758
Alignment:
Q  454 gaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaattgaatttcttaaggtccgcatgtctgctct 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27832624 gaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaattgaatttcttaaggtccgcatgtctgctct 27832723  T
Q  554 ctttgatctttgacttgatttgagggcctggtaac 588  Q
    |||||||||||||||||||||||||||||||||||    
T  27832724 ctttgatctttgacttgatttgagggcctggtaac 27832758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 68 - 194
Target Start/End: Complemental strand, 1658412 - 1658290
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||| ||    
T  1658412 ttcacaaatcctttttcctctttcgctcaagcaggtaaca--ctcgaattcttcttcggtttcgcatttttcgcgcattt--ttttgatttcgcttagat 1658317  T
Q  168 tttataacaattatcttagatcagtgc 194  Q
    || ||  ||||||||||||||| ||||    
T  1658316 ttcatcgcaattatcttagatccgtgc 1658290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 449 - 588
Target Start/End: Original strand, 27827691 - 27827826
Alignment:
Q  449 taaacgaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaattgaatttcttaaggtccgcatgtct 548  Q
    ||||| ||||||||||||||||||||||| ||||||   ||  |||||||||| |||||||||||||||||||||| |||||    ||||||||||||||    
T  27827691 taaacaaattcgtgcacaataagccgatggtctggaattaag-aatgaaggaatcattgctgtgtgcacgaaaattaaatttt---aggtccgcatgtct 27827786  T
Q  549 gctctctttgatctttgacttgatttgagggcctggtaac 588  Q
    || |||| |||||||||| ||||||| |||||||||||||    
T  27827787 gccctctatgatctttgatttgattttagggcctggtaac 27827826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 1658536 - 1658465
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcac 72  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1658536 tctcattctgtcgagcttctcacggaactgaatctcaccgtcgagcttcatacttcaccgatcgagcttcac 1658465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 443 - 523
Target Start/End: Original strand, 27845227 - 27845306
Alignment:
Q  443 gaattataaacgaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaat 523  Q
    |||||||||| ||||  |||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  27845227 gaattataaatgaatatgtgcacaataagtcgatgctctgaat-aaaacaatgaaggaagcattgttgtgtgcacgaaaat 27845306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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