View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19742_high_5 (Length: 603)

Name: NF19742_high_5

Description: NF19742

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19742_high_5

[»] chr3 (1 HSPs)

[»] chr2 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 62; E-Value: 2e-26

Query Start/End: Original strand, 497 - 566

Target Start/End: Original strand, 19942571 - 19942640

Alignment:

Q	497	aaatatgagaatcatttaactattttattatatgaactatgacaattaagtaatataacatatttatcaa	566	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	19942571	aaatataagaatcatttaattattttattatatgaactatgacaattaagtaatataacatatttatcaa	19942640	T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 31; E-Value: 0.00000005

Query Start/End: Original strand, 227 - 289

Target Start/End: Original strand, 10403542 - 10403604

Alignment:

Q	227	tcacaatagttcacttcaaaaatttaacatcttattaacaaattaaaatgaacacatatttta	289	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	10403542	tcacaatggttcacttcaagaatctcacatcttattagccaactaaaatgaacacttatttta	10403604	T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 30; E-Value: 0.0000002

Query Start/End: Original strand, 194 - 289

Target Start/End: Original strand, 12574027 - 12574126

Alignment:

Q	194	catcatccttcgctagcatttcatttt-tcttcatcacaatagttcacttcaaaaatttaacatct---tattaacaaattaaaatgaacacatatttta	289	Q
		\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \| \| \|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	12574027	catcatccatagctagcatttcatcttctctccatcacaatggttcacttcaagagtctcacatctaattattagcaagttaaaatgaacagatatttta	12574126	T

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