View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19742_high_9 (Length: 539)
Name: NF19742_high_9
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 525
Target Start/End: Complemental strand, 23447675 - 23447172
Alignment:
| Q |
16 |
cagtagtttacatttttgataaatagcttgagacctgtttgaactttgaaccaacctgagtttgaaaaatcagaacaatggctctgtatataacttgacc |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23447675 |
cagttgtttacatttttgataaatagcttgagacctgtttgaactttgaaccaacctgagtttgaaaaatcagaacaatggctctgtatgtaacttgacc |
23447576 |
T |
|
| Q |
116 |
acaattttcaaaaatgcagtttaatcccaagcttgcgttgtggtaaatagttaagatgtctgccatatcctt-gttagaagtttgctaataaactttann |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||| || || |
|
|
| T |
23447575 |
acaattttcaaaaatgcagttcaatcccaagcttacgttgtggtaaatagttaaaatgtatgccatatcctttgttagaagtttgctaataagctctatt |
23447476 |
T |
|
| Q |
215 |
nnnnnagcgtaggccagtgannnnnnnnn----agggctgcagtgttttggaatactctgtagttcagtgaccaaatcattggggaatttcagtaacagt |
310 |
Q |
| |
|
||| |||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23447475 |
tttttagcctaggccagtgtattttttttttttagtgctgcagtgttttagaatactctgtagttcagtgaccaaatcattggggaatttcagtaacagc |
23447376 |
T |
|
| Q |
311 |
atccatctagaacatgcttcaggcaatttcagcgttcactgaactattaatccatgacataaccatggtgttgcaacagtcttggagtcatgatcttcat |
410 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23447375 |
atccatctagaacatgcttcagtcaattttagcgttcactgaactattaatccatgacataaccatggtgttgcaacagtcttggagtcatgatcttcat |
23447276 |
T |
|
| Q |
411 |
tagatggtcttggcaaagtgccattaataaagtggattttgttcttggaacatagtgcaaccatgaaggatcgcaatcaagaatgataaattgctccggt |
510 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
23447275 |
tagatggtcttggcaaactgccattaataaagtggattttgttcttggaacataatgc-----------atcgcgatcaagaatgataaattgctccggt |
23447187 |
T |
|
| Q |
511 |
ttaaggggagagaag |
525 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
23447186 |
ttaaggggagagaag |
23447172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 23878242 - 23878275
Alignment:
| Q |
259 |
tggaatactctgtagttcagtgaccaaatcattg |
292 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
23878242 |
tggaatactctgcagttcagtgaccaaatcattg |
23878275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 23421099 - 23421059
Alignment:
| Q |
252 |
agtgttttggaatactctgtagttcagtgaccaaatcattg |
292 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| |||| |
|
|
| T |
23421099 |
agtgttatggaatactctgcagttcagtgaccaaattattg |
23421059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University