View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_low_1 (Length: 767)
Name: NF19742_low_1
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 13 - 577
Target Start/End: Original strand, 39281325 - 39281896
Alignment:
| Q |
13 |
caaagggagtaagaccttggtctatgtttatttggtggaacagagagcttcatctcgttaaaaggccaatttggtgttttaaaactcctgccataagaga |
112 |
Q |
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| T |
39281325 |
caaagggagtaagaccttggtctatgtttatttggtggaacagagagcttcatctcgttaaaaggccaatttggtgttttaaaactcctgccataagaga |
39281424 |
T |
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| Q |
113 |
ttcactttataattctcattgatttgaattgtcagata--gtaattcttattctgagcaatttactattctcatgggaaattggggcttttggctagccg |
210 |
Q |
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| T |
39281425 |
ttcactgtataattctcgttgatttgaattgtctgatatagtaattctgattctgagcaatttactattctcatgggaaattggggcttttggctagccg |
39281524 |
T |
|
| Q |
211 |
ctattatccgccacgtttcatccataggatgcattgccatatttatgtgttagatttttggctttccaccatccatcatcaataatcttcacatagcggt |
310 |
Q |
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| T |
39281525 |
ctattatccgccacgtttcatccataggatgcattgccatatttatgtggcagatttttggctttccaccatccatcatcaataatcttcacatagcggt |
39281624 |
T |
|
| Q |
311 |
aagtggaaatttcactgtagatacatcacttttgaaggatttcattcttgccatacataactgcacgttgcaagagctgtggcgtcgaattcttgtgtta |
410 |
Q |
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| T |
39281625 |
aagtggaaattttgctgtagatacatcacttttgaaggatttcgtttttgccatacataactgcacgttgcaagagctgtggcgtcgaactcttgtgtta |
39281724 |
T |
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| Q |
411 |
a--nnnnnnnnnaaaaccttaccaaatttttgtgtcagatgaaatctcaataaattaatcatgtgctccttctc---aaatgtcagagtttgtcagactg |
505 |
Q |
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| T |
39281725 |
atttttttttttaaaaccttaccaaatttttgtgtcagatgaaatctcaataaattaatcatctgctccttctcagtaaatgtcagagtttgtcagactg |
39281824 |
T |
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| Q |
506 |
caagtacgttgatggtagaagcaaatgtattgtttcagcagattttgtgctgctgagaatcaattgagttca |
577 |
Q |
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| T |
39281825 |
caagtacgttgatggcagaagcaaatgtattgtttcagcagattttgtgctgctgagaatcaattgagttca |
39281896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 644 - 753
Target Start/End: Original strand, 39281963 - 39282076
Alignment:
| Q |
644 |
ccattgtggggtatggtgtttggtaaaatgcctacgagaaaaatctggtgtt----atcgcatgttttttggtaagaattagaagacaaatgttttacaa |
739 |
Q |
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| T |
39281963 |
ccattgtgggataaggtgtttggtaaaatgcctacgagaaaaatctggtgtttagcatcacatgttttttggtaagaattagaagacaaatgttttacaa |
39282062 |
T |
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| Q |
740 |
catgtgttgctcat |
753 |
Q |
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| T |
39282063 |
catgtgttgctcat |
39282076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 168 - 289
Target Start/End: Complemental strand, 17348648 - 17348529
Alignment:
| Q |
168 |
caatttactattctcatgggaaattggggcttttggctagccgctattatccgccacgtttcatccataggatgcattgccatatttatgtgttagattt |
267 |
Q |
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| T |
17348648 |
caatttactattctcatggcaaatcaggactttta-ctagcctccataatccgccacatttcatccaaagggtgcattgccatatttgtgtg-taaattt |
17348551 |
T |
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| Q |
268 |
ttggctttccaccatccatcat |
289 |
Q |
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| T |
17348550 |
ttagctatccaccatccatcat |
17348529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 17348884 - 17348789
Alignment:
| Q |
8 |
agtagcaaagggagtaagaccttggtctatgtttatttggtggaacagagagcttcatctcgttaaaaggccaatttggtgttttaaaactcctgc |
103 |
Q |
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| T |
17348884 |
agtatcaaagggagtaagaccttcttctatgtttatttggtggaatggagagcgttttcatattagaaggccaatttggtgttttatagctcctgc |
17348789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 658 - 753
Target Start/End: Original strand, 16700879 - 16700976
Alignment:
| Q |
658 |
ggtgtttggtaaaatgcctacgagaaaaatctggtgtt----atcgcatgttttttggtaagaattagaagacaaatgttttacaacatgtgttgctcat |
753 |
Q |
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| T |
16700879 |
ggtgtttggtaaaatgcctatgaataaaatttggtgtttagcatcacatg-tttttggtaagagttaaaagac-aatgtttttcaacatgtgttgctcat |
16700976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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