View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19742_low_11 (Length: 505)

Name: NF19742_low_11
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19742_low_11
NF19742_low_11
[»] chr1 (20 HSPs)
chr1 (14-488)||(28238696-28239170)
chr1 (211-477)||(47568782-47569048)
chr1 (187-422)||(28231180-28231415)
chr1 (18-141)||(28231470-28231593)
chr1 (48-126)||(47569148-47569226)
chr1 (272-431)||(23786715-23786874)
chr1 (38-116)||(677212-677290)
chr1 (60-137)||(6326783-6326860)
chr1 (264-477)||(6326999-6327212)
chr1 (277-477)||(28325923-28326126)
chr1 (51-140)||(21159167-21159259)
chr1 (63-128)||(14508844-14508909)
chr1 (63-129)||(671025-671091)
chr1 (84-129)||(4251618-4251663)
chr1 (83-140)||(23787015-23787072)
chr1 (83-140)||(24621795-24621852)
chr1 (63-129)||(2289024-2289090)
chr1 (187-431)||(21159318-21159565)
chr1 (65-113)||(28326317-28326365)
chr1 (67-119)||(12535516-12535568)
[»] chr5 (1 HSPs)
chr5 (63-127)||(1717877-1717941)
[»] chr3 (1 HSPs)
chr3 (63-137)||(47924945-47925019)
[»] chr2 (1 HSPs)
chr2 (63-129)||(9066268-9066334)


Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 14 - 488
Target Start/End: Complemental strand, 28239170 - 28238696
Alignment:
Q  14 agactagatgactatatgtgcaagaatcagggctgatgttgtgaacatgaatcatttcagaatacaaatcataggcttggtttacaagtctatctttgca 113  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28239170 agactagatgactatatgtgcaagaatcagggctgatgttgttaacatgaatcatttcagaatacaaatcataggcttggtttacaagtctatctttgca 28239071  T
Q  114 gagcctgtatatgattgaattataacactgcaggagagtaaagtcaccttccccatcaatctggagtgcacgcctcaacaactgtattgctgtgtgcgtt 213  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  28239070 gagcctgtatatgatttaattataacaccgcaggagagtaaagtcaccttcctcatcagtctggagtgcacgcctcaacaactgtattgctgtgtgcgtt 28238971  T
Q  214 tctcctatcttacataatccttcaattagaacaagataacacttatggttcaactgaaaaccctttttaagtatgatgtaattgtaaaagagcattgctt 313  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  28238970 tctcctatcttacataatcctttgattagaacaagataacacttatggtccaactgaaaaccctttttaagtatgatgtaattgtaaaagtgcattgcct 28238871  T
Q  314 tgtgaatctgatgtctatcacaaaaaccatataaaagaaaatacaaagtaccagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagat 413  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28238870 tgtgaatctgatgtctatcacaaaaaccatataaaagagaatacaaagtaccagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagat 28238771  T
Q  414 agctgaagacatgttaccatcgacagaatgacatttgatgaggatagcccaagtgtgaatgtcttgggtagactc 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28238770 agctgaagacatgttaccatcgacagaatgacatttgatgaggatagcccaagtgtgaatgtcttgggtagactc 28238696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 211 - 477
Target Start/End: Complemental strand, 47569048 - 47568782
Alignment:
Q  211 gtttctcctatcttacataatccttcaattagaacaagataacacttatggttcaactgaaaaccctttttaagtatgatgtaattgtaaaagagcattg 310  Q
    ||||||||||||| ||||||||| |  || |||| ||||||||  | |||||||||| ||||||| |||||||||||||||| ||||||||| |||||||    
T  47569048 gtttctcctatctcacataatccattgatcagaataagataactatcatggttcaacagaaaaccgtttttaagtatgatgtcattgtaaaacagcattg 47568949  T
Q  311 ctttgtgaatctgatgtctatcacaaaaaccatataaaagaaaatacaaagtaccagcagtaggatgatgaccggtgtcgatgatcttatggaaaagaga 410  Q
    |||||| | ||||  ||||   ||||||||||  |||||||  || ||||||    | |||||||| || ||||||||||||||| |||||||| | |||    
T  47568948 ctttgtcagtctgtcgtctgcgacaaaaaccaactaaaagatgattcaaagtttgtgtagtaggattatcaccggtgtcgatgattttatggaataaaga 47568849  T
Q  411 gatagctgaagacatgttaccatcgacagaatgacatttgatgaggatagcccaagtgtgaatgtct 477  Q
    |||| |||||||||| ||||| |    ||| ||||| | |||||||||||||||||| ||| |||||    
T  47568848 gatatctgaagacattttaccttgtctagagtgacactggatgaggatagcccaagtatgactgtct 47568782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 187 - 422
Target Start/End: Complemental strand, 28231415 - 28231180
Alignment:
Q  187 ctcaacaactgtattgctgtgtgcgtttctcctatcttacataatccttcaattagaacaagataacacttatggttcaactgaaaaccctttttaagta 286  Q
    ||||||||||| |||||||| || ||||||||||||| ||||||||| |   |||||| |  |||||  | || ||||||||||||||||||||||||||    
T  28231415 ctcaacaactggattgctgtttgagtttctcctatctcacataatccattgcttagaatataataactttcatcgttcaactgaaaaccctttttaagta 28231316  T
Q  287 tgatgtaattgtaaaagagcattgctttgtgaatctgatgtctatcacaaaaaccatataaaagaaaatacaaagtaccagcagtaggatgatgaccggt 386  Q
    ||||   |||||||||||||| ||| || ||||||| |||| | |||| ||||||   || ||||  || |||| |    | ||||||||||| ||||||    
T  28231315 tgataccattgtaaaagagcaatgcattatgaatctcatgtttgtcacgaaaacctcgtagaagatgattcaaattttgtgtagtaggatgataaccggt 28231216  T
Q  387 gtcgatgatcttatggaaaagagagatagctgaaga 422  Q
    ||||||||| |||| ||| ||||||| |||||||||    
T  28231215 gtcgatgattttattgaatagagagaaagctgaaga 28231180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 28231593 - 28231470
Alignment:
Q  18 tagatgactatatgtgcaagaatcagggctgatgttgtgaacatgaatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcagagc 117  Q
    |||||| |||||||||  | || ||||  ||||||||| ||||| ||||||||||||||| || |||||||||||||| ||||||||||||||||||||     
T  28231593 tagatgtctatatgtgtgacaaccaggcttgatgttgttaacataaatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagt 28231494  T
Q  118 ctgtatatgattgaattataacac 141  Q
    ||| |||| |||||||||||||||    
T  28231493 ctgaatataattgaattataacac 28231470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 47569226 - 47569148
Alignment:
Q  48 gatgttgtgaacatgaatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcagagcctgtatatg 126  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||    
T  47569226 gatgttgttaacgtgaatcatttcagaatataaatcataggcttggtttacaagtctatctttgcagagtctgaatatg 47569148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 431
Target Start/End: Complemental strand, 23786874 - 23786715
Alignment:
Q  272 aaccctttttaagtatgatgtaattgtaaaagagcattgctttgtgaatctgatgtctatcacaaaaaccatataaaagaaaatacaaagtaccagcagt 371  Q
    ||||||||||||||||||||| ||| |||||  ||||||||||||  ||||||  ||||  ||||||||| | ||| |||  ||  |||||  |||||||    
T  23786874 aaccctttttaagtatgatgtcattataaaacggcattgctttgtctatctgacttctaagacaaaaaccttctaagagagcatttaaagtttcagcagt 23786775  T
Q  372 aggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttacc 431  Q
    ||||| |||||||| ||||||||| |||| ||| | | ||| ||||||||||||||||||    
T  23786774 aggataatgaccggagtcgatgattttattgaataaatagagagctgaagacatgttacc 23786715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 677290 - 677212
Alignment:
Q  38 aatcagggctgatgttgtgaacatgaatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcagag 116  Q
    |||||||| |||| |||  ||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||    
T  677290 aatcagggttgattttggtaacatgaatcatttcagaatataaatcataggcttgatgtacaagtctatctttgcagag 677212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 6326783 - 6326860
Alignment:
Q  60 atgaatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcagagcctgtatatgattgaattata 137  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||  |||||| || |||||    
T  6326783 atgaatcatttcagaatataaatcataggcttggtttgcaagtctatctttgcagagtctgagtatgatcgagttata 6326860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 477
Target Start/End: Original strand, 6326999 - 6327212
Alignment:
Q  264 caactgaaaaccctttttaagtatgatgtaattgtaaaagagcattgctttgtgaatctgatgtctat--cacaaaaaccatataaaagaaaatacaaag 361  Q
    |||||||||||||| |||||||| ||||| ||| |||||||| ||||||||||||||||  || ||||    ||||||||||  |||| |  ||||||||    
T  6326999 caactgaaaaccctgtttaagtacgatgtcattataaaagaggattgctttgtgaatct--tgcctatgcggcaaaaaccatcgaaaatatcatacaaag 6327096  T
Q  362 taccagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttaccatcgacagaatgacatttgatgaggatagc 461  Q
    |  ||| || |||| ||||||| || |  ||||| |||| ||| | | ||||||| |||||||||||||||| || | | |||||| |||||||||| |     
T  6327097 tttcagaagaaggaggatgaccagtttttatgatattattgaataaacagatagccgaagacatgttaccatggaaacagtgacatgtgatgaggattga 6327196  T
Q  462 ccaagtgtgaatgtct 477  Q
    |||||| |||||||||    
T  6327197 ccaagtatgaatgtct 6327212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 477
Target Start/End: Complemental strand, 28326126 - 28325923
Alignment:
Q  277 tttttaagtatgatgtaattgtaaaagagcattgctttgtgaatctgatgtctatcacaaaaaccatataaaagaaaatacaaagt---accagcagtag 373  Q
    ||||| |||| ||| |||||||||||||||||||||||||||||||| || |   ||||||||||||  | ||||| || ||||||     |||||||||    
T  28326126 ttttttagtacgatataattgtaaaagagcattgctttgtgaatctggtggcggacacaaaaaccatggagaagaatattcaaagtttcctcagcagtag 28326027  T
Q  374 gatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttaccatcgacagaatgacatttgatgaggatagcccaagtgtgaat 473  Q
    || | |||||| |||  ||||| |||||||| | ||| || || ||| ||||||||||||||| ||  |||  |||||||||||| | |||||| |||||    
T  28326026 gacggtgaccgttgtttatgattttatggaagaaagacatggcggaaaacatgttaccatcgaaagcgtgagctttgatgaggattgtccaagtatgaat 28325927  T
Q  474 gtct 477  Q
    ||||    
T  28325926 gtct 28325923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 21159167 - 21159259
Alignment:
Q  51 gttgtgaacatgaatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcag---agcctgtatatgattgaattataaca 140  Q
    ||||| ||||||||  ||||||||||| ||||||||||||||||||| ||||||||||||||||   |||||| |||||| || |||||||||    
T  21159167 gttgttaacatgaagaatttcagaatataaatcataggcttggtttataagtctatctttgcaggctagcctgaatatgactgtattataaca 21159259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 14508844 - 14508909
Alignment:
Q  63 aatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcagagcctgtatatgat 128  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||| || ||| |||||||    
T  14508844 aatcatttcagaatataaatcataggcttggtttacacgtctatctttgcatagtctgaatatgat 14508909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 671025 - 671091
Alignment:
Q  63 aatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcagagcctgtatatgatt 129  Q
    |||||||||| |||| ||| ||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  671025 aatcatttcaaaatataaaccatagccttggtttacaagtctatctttgcacagcctgaatatgatt 671091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 4251618 - 4251663
Alignment:
Q  84 ataggcttggtttacaagtctatctttgcagagcctgtatatgatt 129  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  4251618 ataggcttggtttacaagtctatctttgcagagcctggatatgatt 4251663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 23787072 - 23787015
Alignment:
Q  83 cataggcttggtttacaagtctatctttgcagagcctgtatatgattgaattataaca 140  Q
    |||||||||||||||||||||| |||||| |||||||| |||||||||| ||||||||    
T  23787072 cataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataaca 23787015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 24621795 - 24621852
Alignment:
Q  83 cataggcttggtttacaagtctatctttgcagagcctgtatatgattgaattataaca 140  Q
    |||||||||||||||||||||| |||||| |||||||| |||||||||| ||||||||    
T  24621795 cataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataaca 24621852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 2289024 - 2289090
Alignment:
Q  63 aatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcagagcctgtatatgatt 129  Q
    |||||||| |||||| ||||||||||||||| ||||||||||||| |||| |||||||  |||||||    
T  2289024 aatcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagtatgatt 2289090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 431
Target Start/End: Original strand, 21159318 - 21159565
Alignment:
Q  187 ctcaacaactgtattgctgtgtgcgtttctcctatcttacataatccttcaattagaacaagataacacttatggttcaactgaaaaccc---tttttaa 283  Q
    ||||||||||| || ||||  || ||||||||||||  |||||||||    ||||||| || |||||  | ||||||||||| ||||||    ||| | |    
T  21159318 ctcaacaactggatggctgattgagtttctcctatccgacataatccagtgattagaataatataactatcatggttcaactaaaaaccaccatttatta 21159417  T
Q  284 gtatgatgtaattgtaaaagagcattgctttgtgaatctgatgtctatcacaaaaaccatataaaagaaaatacaaagtaccagcagtaggatgatgacc 383  Q
     |||||||| ||||||||||||||||| ||||||| | | |  | |   |||||||||||  | ||||| || ||||||  ||| | ||||||||| |||    
T  21159418 ttatgatgtcattgtaaaagagcattgatttgtgagtttcacctttgcgacaaaaaccatcgagaagaagattcaaagtttcagtactaggatgattacc 21159517  T
Q  384 ggtgtcgatgatcttatggaaaagagagatagctgaagacatgttacc 431  Q
    ||||| |||||| |||  ||| |||||||| || ||||||||||||||    
T  21159518 ggtgttgatgatattacagaatagagagatggcagaagacatgttacc 21159565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 28326365 - 28326317
Alignment:
Q  65 tcatttcagaatacaaatcataggcttggtttacaagtctatctttgca 113  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||||||    
T  28326365 tcatttcagaatataaatcataagcttggtttataagtctatctttgca 28326317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 12535516 - 12535568
Alignment:
Q  67 atttcagaatacaaatcataggcttggtttacaagtctatctttgcagagcct 119  Q
    ||||||||| | ||| ||||||||| ||||||||||||||||| |||||||||    
T  12535516 atttcagaaaataaagcataggcttcgtttacaagtctatcttcgcagagcct 12535568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 1717941 - 1717877
Alignment:
Q  63 aatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcagagcctgtatatga 127  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||    
T  1717941 aatcatttcagaatataaatcataggcttggtttacaagtctatctttgcatagtctgaatatga 1717877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 47924945 - 47925019
Alignment:
Q  63 aatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcagagcctgtatatgattgaattata 137  Q
    ||||||||||||||| || ||||||||||| ||||| |||||||||||||||||  ||  ||||||||| |||||    
T  47924945 aatcatttcagaatagaagtcataggcttgatttactagtctatctttgcagagggtgagtatgattgagttata 47925019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 9066334 - 9066268
Alignment:
Q  63 aatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcagagcctgtatatgatt 129  Q
    ||||||||  ||||| ||||||||||||||||||||| ||||| |||| || || ||| ||||||||    
T  9066334 aatcatttgtgaatataaatcataggcttggtttacaggtctacctttacatagtctgaatatgatt 9066268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University