View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_low_15 (Length: 427)
Name: NF19742_low_15
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 413
Target Start/End: Complemental strand, 31953767 - 31953364
Alignment:
| Q |
11 |
aaaatatccttaccctttaccctcacaatccataaaactccttaacaaaacaaaggatattaaaggaaactcattaattgccaagtcaaatagtatctat |
110 |
Q |
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||||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31953767 |
aaaatatccctaccctttatcctcacaatccataaaaccccttaaaaaaacaaaggatattaaaggaaactcattaattgccaagtcaaatagtatctat |
31953668 |
T |
|
| Q |
111 |
attctatctatataggattattcccatgtcatgtcaaactctatgctagtgcaacactttcatgtgttgctttcgtttctaaatagaacaagaaagaaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31953667 |
attctatctatataggattattcccatgtcatgtcaaactctatgctagtgcaacactttcatgtgttgctttcgtttctaaatagaacaagaaagaaaa |
31953568 |
T |
|
| Q |
211 |
taagtaaaacaaac-nnnnnnntcttcaattggttgcaagtaacttattataagcacttaacatggttggtttttaacatgtgcaaaagaatcaagagta |
309 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31953567 |
taagtaaaacaaacaaaaaaaatcttcaattggttgcaagtaacttattataagcacttaacatggttggtttttaacatgtgcaaaagaatcaagaata |
31953468 |
T |
|
| Q |
310 |
ttgactattctaaactcttttgattatgtttttgagtctcttttcacgttaatgtttatgtcatcttaatgcgaccgtgattgaggctgcatcaactata |
409 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31953467 |
ttgactattctaaactcttttgattgtgtttttgagtctcttttcacgttaatgtttatgtcatcttaatgcgaccgtgattgaggctgcatcaactata |
31953368 |
T |
|
| Q |
410 |
tttg |
413 |
Q |
| |
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|||| |
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| T |
31953367 |
tttg |
31953364 |
T |
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