View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_low_17 (Length: 385)
Name: NF19742_low_17
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 10466948 - 10467303
Alignment:
| Q |
16 |
atatacctccattttgagcctctcaaatctttcatgataaatattcaagaagagactattttcgagttaaaatattctcccatttcgatccacttaaaaa |
115 |
Q |
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| T |
10466948 |
atatacctccattttgagcctctcaaatctttcatgataaatattcaagaagagactattttcgagttaaaatatactcccatttcgatccacttaaaaa |
10467047 |
T |
|
| Q |
116 |
tcgaatattaaactcttccagtaatactacatctataaaacaaattatccttaacctcaagattttccggtcaaaatacacaattcgaactaactccttc |
215 |
Q |
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|||| |||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||||| |
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| T |
10467048 |
tcgagtattaaacccttccagcaatgctacatctataaaacaaattatccttaatctcaagatttttcggacaaaatacacaattcgaaccaactccttc |
10467147 |
T |
|
| Q |
216 |
caccaacactccccttctagttatgtttccgcaagtaagaagtctaccaataataactatcctcaatttgataaatcctaagtccaaaaaatgtcatctc |
315 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10467148 |
caccaacactccccttctagttatgtttccgcaaataagaagtctaccaataataactatcctcaatttgatgaatcctaagtccaaaaaatgtcatctc |
10467247 |
T |
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| Q |
316 |
taccatcacccttacnnnnnnncatcctcaatttgttaaaagatactgtaccaact |
371 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
10467248 |
taccatcacccttacaaaaaaacatcttcaatttgttaaaagatactgtaccaact |
10467303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 2017191 - 2017130
Alignment:
| Q |
103 |
atccacttaaaaatcgaatattaaactcttccagtaatactacatctataaaacaaattatc |
164 |
Q |
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| T |
2017191 |
atccacttaaaaatcgaatatcaaacctttccaacaaaattacatctacaaaacaaattatc |
2017130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 141 - 265
Target Start/End: Complemental strand, 6700668 - 6700545
Alignment:
| Q |
141 |
actacatctataaaacaaattatccttaacctcaagattttccggtcaaaatacacaattcgaactaactccttccaccaacactccccttctagttatg |
240 |
Q |
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||||||| || |||| |||||||||| ||||||||||| ||| | ||||| ||||||||| |||||||||||||| ||||||||| ||||||||||| | |
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| T |
6700668 |
actacatatacaaaataaattatcctccacctcaagattgtccagacaaaacacacaattcaaactaactccttcc-ccaacactctccttctagttaag |
6700570 |
T |
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| Q |
241 |
tttccgcaagtaagaagtctaccaa |
265 |
Q |
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||| || |||| ||||||| |||| |
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| T |
6700569 |
tttatgcgagtacgaagtcttccaa |
6700545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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