View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_low_18 (Length: 382)
Name: NF19742_low_18
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 31 - 372
Target Start/End: Original strand, 34315219 - 34315563
Alignment:
| Q |
31 |
gtgtattttcatccatcacccatgtggattgacaataaatttcacattttggtgagaactaatttccatactccccccatgctcacttaacaatatttta |
130 |
Q |
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| T |
34315219 |
gtgtattttcatccatcacccatgtggattgacaataaatttcacattttggtgagaactaatttccatattccccccatgctcacttaacaatatttta |
34315318 |
T |
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| Q |
131 |
cttaaggataaaacgaagaagagttaacaatgcaattacaaaagatatttgcacatagcatgtgtg---atgtatgcagaagagaagttacaataaaaca |
227 |
Q |
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| T |
34315319 |
cttaaggataaaacgaagaagagttaacaatgcaattacaaaagatatttgcacatagcatgtgtggtgatgtatgcagaagagaagttacaataaaaca |
34315418 |
T |
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| Q |
228 |
aaggactaatccaatgacacaggaagagtaaaagtaaaagataatccaatgtattaatcctcatccatttttacatcaattacagtatgagacttgattt |
327 |
Q |
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| T |
34315419 |
aaggactaatccaatgacacaggaagagtaaaagtaaaagataatccaatgtattaatcctcatccatttttacattaattacagtatgagacttgattt |
34315518 |
T |
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| Q |
328 |
aacaaatttttccatttagagactagtggatcataaacttttcat |
372 |
Q |
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| T |
34315519 |
aacaaatttttccatttagagactagtggatcataaacttttcat |
34315563 |
T |
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