View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19742_low_2 (Length: 766)

Name: NF19742_low_2
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19742_low_2
NF19742_low_2
[»] chr6 (5 HSPs)
chr6 (17-755)||(4046372-4047111)
chr6 (506-611)||(14936467-14936572)
chr6 (506-628)||(6330113-6330235)
chr6 (506-611)||(5685354-5685459)
chr6 (526-611)||(6068970-6069055)
[»] chr2 (4 HSPs)
chr2 (506-611)||(23227282-23227387)
chr2 (506-593)||(13724112-13724199)
chr2 (514-590)||(40713978-40714054)
chr2 (506-627)||(37666620-37666741)
[»] chr4 (6 HSPs)
chr4 (521-615)||(31013032-31013126)
chr4 (508-626)||(1716301-1716417)
chr4 (530-629)||(44900077-44900176)
chr4 (506-626)||(3904693-3904813)
chr4 (506-626)||(47838627-47838747)
chr4 (506-626)||(48336263-48336383)
[»] chr7 (2 HSPs)
chr7 (506-626)||(28469481-28469601)
chr7 (506-626)||(7482225-7482345)
[»] chr3 (7 HSPs)
chr3 (510-612)||(53275309-53275411)
chr3 (526-626)||(9213516-9213616)
chr3 (506-629)||(37508918-37509041)
chr3 (506-626)||(17653712-17653832)
chr3 (511-594)||(50989505-50989589)
chr3 (511-594)||(51092637-51092721)
chr3 (506-611)||(9111504-9111609)
[»] scaffold0171 (1 HSPs)
scaffold0171 (513-630)||(12370-12487)
[»] chr5 (3 HSPs)
chr5 (537-630)||(27080981-27081074)
chr5 (506-626)||(36563548-36563668)
chr5 (507-626)||(11795168-11795287)
[»] scaffold0204 (1 HSPs)
scaffold0204 (506-626)||(23785-23905)
[»] scaffold0009 (1 HSPs)
scaffold0009 (506-626)||(49505-49625)
[»] chr8 (4 HSPs)
chr8 (506-626)||(3304288-3304408)
chr8 (506-626)||(12763664-12763784)
chr8 (506-625)||(30171483-30171602)
chr8 (506-627)||(31654612-31654733)
[»] scaffold0650 (1 HSPs)
scaffold0650 (531-594)||(20-83)
[»] chr1 (1 HSPs)
chr1 (506-628)||(39401976-39402098)
[»] scaffold0017 (1 HSPs)
scaffold0017 (526-619)||(30037-30130)


Alignment Details
Target: chr6 (Bit Score: 595; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 17 - 755
Target Start/End: Original strand, 4046372 - 4047111
Alignment:
Q  17 aaaagctccccagattccatatactccataataacatatatatgtcttggggtttctatcacttcataaacttgtataatgtgaggatgtcttaacaatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  4046372 aaaagctccccagattccatatactccataataacatatatattcgttagggtttctatcacctcataaacttgtataatgtgaggatgccttaacaatt 4046471  T
Q  117 ttaaagtattaatttcttttcttgctgcaacaaattgaagaattaaaatattgtaagcaatcttcttcaaaa-aattattgtaagtatctataatcaact 215  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  4046472 ttaaagtattaatttctcttcttactgcaacaaattgaagaattaaaatattgtaagcaatcttcttcaaaaaaattattgtaagtgtctataatcaact 4046571  T
Q  216 ccagaattaaattgtaagtgctcataattgatatagatacatatcatgttctcgaagtttacaattaaattgctagtgctcataaggtgtttgtaattga 315  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4046572 ccagaattaaattgtaaatgctcataattgatatagatacatatcatgttcttgaagtttacaattaaattgctagtgctcataaggtgtttgtaattga 4046671  T
Q  316 ttgacaatgtaaaaagatgaacattgattgtgcatcaaaactaatcactaagtttaataactatacataaatagtataatcacatttcattatattggta 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4046672 ttgacaatgtaaaaagatgaacattgattgtgcatcaaaactaatcactaagtttaataactatacataaatagtataatcacatttcattatattggta 4046771  T
Q  416 catcacaatgttacttctcaaaaccaattgacactaagattatgaaatatgtttggacatatgcataannnnnnnacaataatattcgcaggtcctattt 515  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||       ||||||||| |||||| ||||||||    
T  4046772 catcacaatgttacttctcaaaactaattgacactaagattatgaaatatgtttgtacatatgcataatttttttacaataatactcgcagatcctattt 4046871  T
Q  516 ataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagat 615  Q
    |||||||| ||||| ||||||||||||  || |||||   ||| ||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||    
T  4046872 ataaggaatttttaagtcaacaaaagaaaatatatttaaataaaaatttggattaaatatatcgatttttgtagaccaaaacgtcttttataaataagat 4046971  T
Q  616 cggagggagtagttaccatactcgaaaattgttgacatacaaataacatggtacctttttcttccatttgtgtattctctttccaacggcaatcaatgac 715  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4046972 cagagggagtagttaccatactcgaaaattgttgacatacaaataacatggtacctttttcttccatttgtgtattctctttccaacggcaatcaatgag 4047071  T
Q  716 atatatggcaactttttcaccagtcaatacattctctgct 755  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4047072 atatatggcaactttttcaccagtcaatacattctctgct 4047111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 611
Target Start/End: Original strand, 14936467 - 14936572
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||||||| || ||| ||| |||||||||||||||| |||||||| | | ||||||||||   |||||| ||| ||| ||||||||| |||  ||| |||    
T  14936467 ggtcctatatagaagaaacatttaggtcaacaaaaggtgatgtatctagttaagaatttgttccaaatacatcaactattgttgacccaaatatctctta 14936566  T
Q  606 taaata 611  Q
    ||||||    
T  14936567 taaata 14936572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 506 - 628
Target Start/End: Complemental strand, 6330235 - 6330113
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  6330235 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 6330136  T
Q  606 taaataagatcggagggagtagt 628  Q
    |||||| || |||||| ||||||    
T  6330135 taaataggaccggaggtagtagt 6330113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 611
Target Start/End: Complemental strand, 5685459 - 5685354
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||| |||||||||| ||| ||| ||||| ||||| ||||||||  | | ||| |||||||  |||||| ||| ||||||||||||| ||| || |||||    
T  5685459 ggtcttatttataagaaacatttgggtcagcaaaatatgatgtaacttgttaataatttggtccaaatacatcaacttttgttgacccaaatgtttttta 5685360  T
Q  606 taaata 611  Q
    | ||||    
T  5685359 ttaata 5685354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 611
Target Start/End: Original strand, 6068970 - 6069055
Alignment:
Q  526 tttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaata 611  Q
    |||||||||||||||||||| ||||   | ||| ||||| || |||||| ||  ||||||||||||| |||  |||||||||||||    
T  6068970 tttaggtcaacaaaagatgaagtatcgagttaaaaatttagaccaaatacattaacttttgttgacctaaatatcttttataaata 6069055  T

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Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 506 - 611
Target Start/End: Original strand, 23227282 - 23227387
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||| |||||||||| ||  |||||||||||||||  |||||||| || ||||||||||||| |||||| ||| ||||||||||||||||| |||| |||    
T  23227282 ggtcatatttataagaaatatttaggtcaacaaaatgtgatgtatctgactaagaatttggaccaaatacatcaacttttgttgaccaaaatgtctctta 23227381  T
Q  606 taaata 611  Q
    ||||||    
T  23227382 taaata 23227387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 506 - 593
Target Start/End: Original strand, 13724112 - 13724199
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgacca 593  Q
    ||||||||||| |||  || | |||||||||||||| |||||||||||| ||| || ||||| || ||| ||| ||||||||||||||    
T  13724112 ggtcctatttacaagagacatctaggtcaacaaaagttgatgtatttggttaaaaaattggaccagatacatcaacttttgttgacca 13724199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 590
Target Start/End: Complemental strand, 40714054 - 40713978
Alignment:
Q  514 ttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttga 590  Q
    |||||||  |||| |||||||||||||| |||||||||||| | | ||| |||| |||||| |||||||||| ||||    
T  40714054 ttataagagacttgtaggtcaacaaaagttgatgtatttggttcataatatggaccaaatacatcgacttttattga 40713978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 627
Target Start/End: Original strand, 37666620 - 37666741
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||||||||||||||  | |||| ||||||| |||| |||||||| | | ||| ||||  | ||||||| ||  ||||||||||||| |||  ||| |||    
T  37666620 ggtcctatttataagagaattttgggtcaactaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctctta 37666719  T
Q  606 taaataagatcggagggagtag 627  Q
    |||||| || |||||| |||||    
T  37666720 taaataggaccggaggtagtag 37666741  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 521 - 615
Target Start/End: Complemental strand, 31013126 - 31013032
Alignment:
Q  521 gaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagat 615  Q
    |||| ||||||||||||||||||||||||| | | |||||||||  | |||||| ||| ||||||||||| | ||| ||||||||||||||||||    
T  31013126 gaacatttaggtcaacaaaagatgatgtatctagttaagaatttaaaccaaatacatctacttttgttgatctaaatgtcttttataaataagat 31013032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 508 - 626
Target Start/End: Complemental strand, 1716417 - 1716301
Alignment:
Q  508 tcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttata 607  Q
    |||||||||||||  |  ||||||||||| |||| ||||| || ||| ||| |  |||||||| ||| ||| ||||||||||||||||   ||| |||||    
T  1716417 tcctatttataagagaagtttaggtcaaccaaagttgatgcatctggttaaaa--ttggatcagatacatcaacttttgttgaccaaattatctcttata 1716320  T
Q  608 aataagatcggagggagta 626  Q
    ||||||| |||||||||||    
T  1716319 aataagaccggagggagta 1716301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 530 - 629
Target Start/End: Complemental strand, 44900176 - 44900077
Alignment:
Q  530 ggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagatcggagggagtagtt 629  Q
    |||||||||||| ||| |||| ||| |||  | ||||| || ||||||| |||||||||||||| ||  ||| ||||||||| || ||||||||||||||    
T  44900176 ggtcaacaaaagttgacgtatctggttaaacaattggaccagatatatcaacttttgttgaccagaatatctcttataaataggaccggagggagtagtt 44900077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 626
Target Start/End: Original strand, 3904693 - 3904813
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||||||||||||||  | |||| |||||||||||  |||||||||| | ||| ||||  |  |||||| ||  ||||||||||||| |||  |||||||    
T  3904693 ggtcctatttataagagaattttgggtcaacaaaaattgatgtatttagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctttta 3904792  T
Q  606 taaataagatcggagggagta 626  Q
    |||||| || |||||| ||||    
T  3904793 taaataggaccggaggtagta 3904813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 626
Target Start/End: Original strand, 47838627 - 47838747
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  47838627 ggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgaccgaaatttctctta 47838726  T
Q  606 taaataagatcggagggagta 626  Q
    |||||| ||||||||| ||||    
T  47838727 taaataggatcggaggtagta 47838747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 626
Target Start/End: Complemental strand, 48336383 - 48336263
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    ||||||||||||||| || |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  48336383 ggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 48336284  T
Q  606 taaataagatcggagggagta 626  Q
    |||||| || |||||| ||||    
T  48336283 taaataggaccggaggtagta 48336263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 506 - 626
Target Start/End: Complemental strand, 28469601 - 28469481
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||| |||||||||| | | |||||||||| ||||  |||||||| ||  ||| |||||||| |  ||| ||  ||||||||||||| ||| ||||||||    
T  28469601 ggtcatatttataagaatcatttaggtcaataaaatgtgatgtatctgattaataatttggacctgatacattaacttttgttgacctaaatgtctttta 28469502  T
Q  606 taaataagatcggagggagta 626  Q
    |||||||||||| ||||||||    
T  28469501 taaataagatcgaagggagta 28469481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 626
Target Start/End: Complemental strand, 7482345 - 7482225
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  | ||||||| ||  ||||||||||||| |||  ||| |||    
T  7482345 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctctta 7482246  T
Q  606 taaataagatcggagggagta 626  Q
    |||||| || |||||| ||||    
T  7482245 taaataggaccggaggtagta 7482225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 510 - 612
Target Start/End: Complemental strand, 53275411 - 53275309
Alignment:
Q  510 ctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaa 609  Q
    ||||||||||| ||  || |||||||||||| ||||||||| |   ||||||||||||| ||||| ||| | ||||||||||| |||  |||||||||||    
T  53275411 ctatttataagaaatattaaggtcaacaaaatatgatgtatctaattaagaatttggattaaatacatcaatttttgttgacccaaatatcttttataaa 53275312  T
Q  610 taa 612  Q
    |||    
T  53275311 taa 53275309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 626
Target Start/End: Complemental strand, 9213616 - 9213516
Alignment:
Q  526 tttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagatcggagggagt 625  Q
    |||||||||||||||  |||||||||||| ||  || || |  || ||| ||| |||||||||||| |||| |||||||||||||| || ||||||||||    
T  9213616 tttaggtcaacaaaaattgatgtatttggttataaaattagtccagatacatcaacttttgttgactaaaatgtcttttataaataggaccggagggagt 9213517  T
Q  626 a 626  Q
    |    
T  9213516 a 9213516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 506 - 629
Target Start/End: Complemental strand, 37509041 - 37508918
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  37509041 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 37508942  T
Q  606 taaataagatcggagggagtagtt 629  Q
    |||||| || ||||||||||||||    
T  37508941 taaataggaccggagggagtagtt 37508918  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 626
Target Start/End: Complemental strand, 17653832 - 17653712
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  17653832 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 17653733  T
Q  606 taaataagatcggagggagta 626  Q
    |||||| || |||||||||||    
T  17653732 taaataggaccggagggagta 17653712  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 594
Target Start/End: Complemental strand, 50989589 - 50989505
Alignment:
Q  511 tatttataaggaacttttaggtcaacaaaagatgatgta-tttggctaagaatttggatcaaatatatcgacttttgttgaccaa 594  Q
    |||||||||| || ||||| ||||| ||||||||||||| ||||| |||||||||| |  ||||||||  |||||| ||||||||    
T  50989589 tatttataagaaatttttatgtcaataaaagatgatgtattttggttaagaatttgaactaaatatattaacttttcttgaccaa 50989505  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 594
Target Start/End: Complemental strand, 51092721 - 51092637
Alignment:
Q  511 tatttataaggaacttttaggtcaacaaaagatgatgta-tttggctaagaatttggatcaaatatatcgacttttgttgaccaa 594  Q
    |||||||||| || ||||| ||||| ||||||||||||| ||||| |||||||||| |  ||||||||  |||||| ||||||||    
T  51092721 tatttataagaaatttttatgtcaataaaagatgatgtattttggttaagaatttgaactaaatatattaacttttcttgaccaa 51092637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 611
Target Start/End: Original strand, 9111504 - 9111609
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  | ||||||| ||  ||||||||||||| |||  ||| |||    
T  9111504 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctctta 9111603  T
Q  606 taaata 611  Q
    ||||||    
T  9111604 taaata 9111609  T

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Target: scaffold0171 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 513 - 630
Target Start/End: Original strand, 12370 - 12487
Alignment:
Q  513 tttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataa 612  Q
    |||||||| ||| || ||||||||||||  |||||||| ||| ||||||||| || |||| | | | |||||| ||||||||||  ||| |||||||||     
T  12370 tttataagaaacattcaggtcaacaaaatgtgatgtatctggttaagaatttagaccaaacacaccaactttttttgaccaaaatatctcttataaatag 12469  T
Q  613 gatcggagggagtagtta 630  Q
    || |||||||| ||||||    
T  12470 gaccggagggaatagtta 12487  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 630
Target Start/End: Original strand, 27080981 - 27081074
Alignment:
Q  537 aaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagatcggagggagtagtta 630  Q
    |||||||||| ||||||  ||| ||||| ||| ||||| ||| ||||||||||||| ||| |||| || |||||| |||||||  |||||||||    
T  27080981 aaaagatgatttatttgattaaaaatttagattaaatacatcaacttttgttgacctaaatgtctcttgtaaataggatcggaaagagtagtta 27081074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 626
Target Start/End: Original strand, 36563548 - 36563668
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  36563548 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 36563647  T
Q  606 taaataagatcggagggagta 626  Q
    |||||| ||||||||| ||||    
T  36563648 taaataggatcggaggtagta 36563668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 626
Target Start/End: Complemental strand, 11795287 - 11795168
Alignment:
Q  507 gtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttat 606  Q
    ||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| ||||    
T  11795287 gtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttat 11795188  T
Q  607 aaataagatcggagggagta 626  Q
    ||||| ||||||||| ||||    
T  11795187 aaataggatcggaggtagta 11795168  T

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Target: scaffold0204 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 626
Target Start/End: Complemental strand, 23905 - 23785
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    ||||||||||||||| || |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  23905 ggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 23806  T
Q  606 taaataagatcggagggagta 626  Q
    |||||| || |||||| ||||    
T  23805 taaataggaccggaggtagta 23785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 626
Target Start/End: Complemental strand, 49625 - 49505
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||||||||||||||  | |||| |||||||||||| |||||||||| | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  49625 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatttagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 49526  T
Q  606 taaataagatcggagggagta 626  Q
    |||||| || |||||| ||||    
T  49525 taaataggaccggaggtagta 49505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 626
Target Start/End: Original strand, 3304288 - 3304408
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    ||||||||||||||| || |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  3304288 ggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 3304387  T
Q  606 taaataagatcggagggagta 626  Q
    |||||| || |||||| ||||    
T  3304388 taaataggaccggaggtagta 3304408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 626
Target Start/End: Original strand, 12763664 - 12763784
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  12763664 ggtcctatttataagataattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 12763763  T
Q  606 taaataagatcggagggagta 626  Q
    ||||||||| |||||| ||||    
T  12763764 taaataagaccggaggtagta 12763784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 625
Target Start/End: Complemental strand, 30171602 - 30171483
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    ||||| ||||||||| ||| |||| ||||||||||   ||||||| ||  |||||||||||| ||| || ||  ||||||||||||  |||  ||| ||     
T  30171602 ggtcccatttataagaaacatttaagtcaacaaaatgcgatgtatctgattaagaatttggaccaagtacattaacttttgttgactcaaaattctcttg 30171503  T
Q  606 taaataagatcggagggagt 625  Q
    |||||| |||||||||||||    
T  30171502 taaataggatcggagggagt 30171483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 627
Target Start/End: Complemental strand, 31654733 - 31654612
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    ||||||||||||||   | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  31654733 ggtcctatttataaaagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 31654634  T
Q  606 taaataagatcggagggagtag 627  Q
    |||||| || ||||||||||||    
T  31654633 taaataggaccggagggagtag 31654612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 594
Target Start/End: Original strand, 20 - 83
Alignment:
Q  531 gtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaa 594  Q
    ||||||||||| |||||||||||| ||| ||||| |  |||||| ||| |||||||||||||||    
T  20 gtcaacaaaagttgatgtatttggttaaaaatttagtccaaatacatcaacttttgttgaccaa 83  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 506 - 628
Target Start/End: Original strand, 39401976 - 39402098
Alignment:
Q  506 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 605  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  39401976 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 39402075  T
Q  606 taaataagatcggagggagtagt 628  Q
    |||||| || |||||| ||||||    
T  39402076 taaataggaccggaggtagtagt 39402098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 619
Target Start/End: Original strand, 30037 - 30130
Alignment:
Q  526 tttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagatcgga 619  Q
    |||| ||||| |||||||||||||| | | ||||||||| || |||||| ||| ||||||||| |   ||| |||| ||||||||| |||||||    
T  30037 tttatgtcaataaaagatgatgtatctagttaagaatttagaccaaatacatctacttttgtttatttaaatgtctattataaatatgatcgga 30130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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