View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_low_20 (Length: 379)
Name: NF19742_low_20
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 40325804 - 40325429
Alignment:
| Q |
1 |
cagagccgcgtttcccatacaatccaattttatatgaattatcactttgtagtgcctgcaaaagtctatctgaagcctctttggtagacgcgaaacagac |
100 |
Q |
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| T |
40325804 |
cagagccgcgtttcccatacaatccaattttatatgaattatcactttgcagtgcctgcaaaagtctatctgaagcctctttggtagacgcgaaacacac |
40325705 |
T |
|
| Q |
101 |
aaaattttcagaagagaagtgttctaaacttggaataggactggaaaatggcttgaattcacatcgaatattcaatgcttttagtttgtctagcatttta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||||||||||||| |
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| T |
40325704 |
aaaattttcagaagagaagtgttctaaacttggaataggactggaaaatagcttgaattcacatcggatattcaatgcctttaatttgtctagcatttta |
40325605 |
T |
|
| Q |
201 |
tggcgatgtttcactgcaccatcattcgtcaattgcctatgtttttcttgtcttgacaattgaccaagttcatccactactgtcatattctccacttctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |
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| T |
40325604 |
tggcgatgtttcactgcaccatcattcgtcaattgcctatgtttttcttgtcttgacaattgcccaagttcatccactactgtcatattccccacctctt |
40325505 |
T |
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| Q |
301 |
gtaaaactatttctatttctcttagccactcaaacacatcatcattcaccctttcggttaaacgatcagtttcttc |
376 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40325504 |
gtaaaactatttctgtttctcttagccactcaaacacatcatcattcaccctttcggttaaacgatcagttgcttc |
40325429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 40310524 - 40310324
Alignment:
| Q |
1 |
cagagccgcgtttcccatacaatccaattttatatgaattatcactttgtagtgcctgcaaaagtctatctgaagcctctttggtagacgcgaaacagac |
100 |
Q |
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||||||| || || |||||||||||||||||||| | ||| | ||| |||||||| ||||||||||||||||| |||||| ||| | | ||||| || |
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| T |
40310524 |
cagagcctcgctttccatacaatccaattttatagaacttacgattttctagtgcctccaaaagtctatctgaagtctcttttataggctcaaaacatac |
40310425 |
T |
|
| Q |
101 |
aaaattttcagaagagaagtgttctaaacttggaataggactggaaaatggcttgaattcacatcgaatattcaatgcttttagtttgtctagcatttta |
200 |
Q |
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||||||| ||||||||||||| |||||||||||||| ||| || ||||||||| || |||||| ||||||||||| |||| ||||| ||||||||| |
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| T |
40310424 |
aaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggctcaaactcacatttgatattcaatgcctttaatttgttaagcatttta |
40310325 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
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| |
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|
| T |
40310324 |
t |
40310324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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