View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_low_21 (Length: 365)
Name: NF19742_low_21
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 39118350 - 39118688
Alignment:
| Q |
17 |
aaaagttgcagatcgtatacttttgaagtaagatactgagcggagggcttgtattgaatgcaaattgcaaatcaaaaataaaatcacgtttaggattcaa |
116 |
Q |
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| T |
39118350 |
aaaagttgcagatcgtatacttttgaagtaagatactgagcggagggcttgtattgaatgcaaattgcaaatcaaaaataaaatcacgtttaggattcaa |
39118449 |
T |
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| Q |
117 |
aataagtactaaaatgagaagctgtggccaatagtaatcatcatgcagcaaaatatgggaaaatgttttttgttcaatttgaagcaagattatcataata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39118450 |
aataagtactaaaatgagaagctgtggccaatagtaatcatcatgcagcaaaatatgggaaaatgttttttgttcaatttgaagcaagattatcataata |
39118549 |
T |
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| Q |
217 |
atatcaaatacactaagaaagctgtctgcatagcatcgaagtcattgacttaagacttcaacttgtcagattcctcttaatccatatgattctttgcctc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39118550 |
atatcaaatacactaagaaagctgtctgcatagcatcgaagtcattgacttaagacttcaacttgtcagattcctcttaatccatatgattctttgcctc |
39118649 |
T |
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| Q |
317 |
ctaacaacacaaataaaatttgaagtacaatgaatgatg |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
39118650 |
ctaacaacacaaataaaatttgaagtacaatgaatgatg |
39118688 |
T |
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