View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_low_23 (Length: 331)
Name: NF19742_low_23
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 2760245 - 2760350
Alignment:
| Q |
17 |
taaaaatgaaaaggaagagtaacccgatgcagtcgacgcatgtgttgtctgatagnnnnnnnnnnnntgctatgtcaatgaaaaggaatgtaatgtataa |
116 |
Q |
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| T |
2760245 |
taaaaatgaaaaggaagagtaacccgatgcagtcgacgcatgtgttatctgatagaaaaagaaaaaaagctatgtcaatgaaaaggaatgtaatgtataa |
2760344 |
T |
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| Q |
117 |
caagaa |
122 |
Q |
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|||||| |
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| T |
2760345 |
caagaa |
2760350 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Complemental strand, 33488119 - 33488089
Alignment:
| Q |
283 |
gtccctatatataagacctttttgtcaaaat |
313 |
Q |
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| T |
33488119 |
gtccctatatataagacctttttgtcaaaat |
33488089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 27974905 - 27974937
Alignment:
| Q |
283 |
gtccctatatataagacctttttgtcaaaattg |
315 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
27974905 |
gtccctatatataagacccttttgtcaaaattg |
27974937 |
T |
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