View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_low_25 (Length: 318)
Name: NF19742_low_25
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 45479646 - 45479825
Alignment:
| Q |
13 |
aatactataaaataaaattgttttttagtttggtttgggtgataattaaaattattaagcaataaaatatagactttttggagtacaattttgtgctcga |
112 |
Q |
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| T |
45479646 |
aatactataaaataaaattgttttttagtttggtttgggtgataattaaaattattaagcaataaaatatagactttttggagtacaattttgtgctcga |
45479745 |
T |
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| Q |
113 |
caaataattatatatga----ttttttctatttaagaaaagctatccgtaaatgaattaattatagttgtttgcaaactt |
188 |
Q |
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| T |
45479746 |
caaataattatatatgattttttttttttatttaagaaaagctatccgtaaatgaattaattatagttgtttgcaaactt |
45479825 |
T |
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Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 221 - 318
Target Start/End: Original strand, 45479841 - 45479938
Alignment:
| Q |
221 |
tacacatataatgcaggaagaggtagcaagattgatccgcaatttggcaagttcagggtccaaagcagtaaacttaggacaaatgttgaatgtatgca |
318 |
Q |
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| T |
45479841 |
tacacatataatgcaggaagaggtagcaagattgatccgcaatttggcaagttcagggtccaaagcagtaaacttaggacaaatgttgaatgtatgca |
45479938 |
T |
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