View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_low_26 (Length: 297)
Name: NF19742_low_26
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 48845863 - 48846132
Alignment:
| Q |
17 |
ataaatccaactacataacagccgtcagattagcttcaacagtgtaaaatagatccaactacatacacaaccatcaaatcaactttctcatttcttccta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48845863 |
ataaatccaactacataacagccgtcagattagcttcaacagtgtaaaatagatccaactacatacacaaccatcaaatcaactttctcatttcttccta |
48845962 |
T |
|
| Q |
117 |
gg-agtttggcaccaagtgctctctccaagactccaacttgccaattatcatctgatttggaatggctttccccgactcgtactcttggatcacttgagg |
215 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
48845963 |
gggattttggcaccaagtgctctctccaagactccaacttgccaattatcatctgatttggaatggctttccccgactcgtattctttgatcacttgagg |
48846062 |
T |
|
| Q |
216 |
cttctcattgataatttgagcaagttgtgcctgagtaagcttcttgtccatcctagtttagctttcttca |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48846063 |
cttctcattgataatttgagcaagttgtgcctgagtaagcttcttgtccatcctagtttagctttcttca |
48846132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 7016654 - 7016404
Alignment:
| Q |
17 |
ataaatccaactacataacagccgtcagattagcttcaacagtgtaaaatagatccaactacatacacaaccatcaaatcaactttctcatttcttccta |
116 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| | |
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| T |
7016654 |
ataaacccaactacataacagccgtcagattagcttcaacagtgtaaaatagatccaactacatacacaaccatcaaatcagctgtctcatttcttccca |
7016555 |
T |
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| Q |
117 |
gg-agtttggcaccaagtgctctctccaagactccaacttgccaattatcatctgatttggaatggctttccccgactcgtactcttggatcacttgagg |
215 |
Q |
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|| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7016554 |
gggagtttggcaccaagaactctctccaa--------cttgccaattatcatctgatttggaatggctttccccgactcgtactcctggatcacttgagg |
7016463 |
T |
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| Q |
216 |
cttctcattgataatttgagcaagttgtgcctgagtaagcttcttgtccatcctagttt |
274 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7016462 |
cttctcactgataatttgagcaagttgtgcctgagtaagcttcttgtccatcctagttt |
7016404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 17725580 - 17725790
Alignment:
| Q |
17 |
ataaatccaactacataacagccgtcagattagcttcaacagtgtaaaatagatccaactacatacacaaccatcaaatcaactttctcatttcttccta |
116 |
Q |
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|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| | |
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| T |
17725580 |
ataaatccaactacataatagccgtcagattagctttaacagtgtaaaatagatctaactacatacacagccatcaaattaactttctcatttcttccca |
17725679 |
T |
|
| Q |
117 |
-ggagtttggcaccaagtgctctctccaagactccaacttgccaattatcatctgatttggaatggctttccccgactcgtactcttggatcacttgagg |
215 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17725680 |
cggagtttggcaccaagagctct--------ctccaacttgccaattatatgctgatttggaatggctttccccgactcgtactcgtggatcacttgagg |
17725771 |
T |
|
| Q |
216 |
cttctcattgataatttga |
234 |
Q |
| |
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||||||||||||||||||| |
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| T |
17725772 |
cttctcattgataatttga |
17725790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 35376232 - 35376439
Alignment:
| Q |
17 |
ataaatccaactacataacagccgtcagattagcttcaacagtgtaaaatagatccaactacatacacaaccatcaaatcaac-tttctcatttcttcct |
115 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||||| |
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| T |
35376232 |
ataaattcaactacataacagccgtcagattagcttcaacagtgtaaaatagatccaactacatacacagccatcaaattagcttttctcatttcttccc |
35376331 |
T |
|
| Q |
116 |
a-ggagtttggcaccaagtgctctctccaagactccaacttgccaattatcatctgatttggaatggctttccccgactcgtactcttggatcacttgag |
214 |
Q |
| |
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| | || ||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
35376332 |
acgcagcttggcaccaagagctct--------ctccaacttgccaattatctgctgatttggaatggctttccccgactcatactcctggataacttgag |
35376423 |
T |
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| Q |
215 |
gcttctcattgataat |
230 |
Q |
| |
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|||||||||||||||| |
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| T |
35376424 |
gcttctcattgataat |
35376439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 35376532 - 35376570
Alignment:
| Q |
231 |
ttgagcaagttgtgcctgagtaagcttcttgtccatcct |
269 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| |||| |
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| T |
35376532 |
ttgagcaagttgtgcctgagtaagcttcttttccgtcct |
35376570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 31044713 - 31044633
Alignment:
| Q |
147 |
ctccaacttgccaattatcatctgatttggaatggctttccccgactcgtactcttggatcacttgaggcttctcattgat |
227 |
Q |
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||||||||||| ||||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
31044713 |
ctccaacttgctaattatctgctggtttggaatggctttccctgactcatactcttggatcacttgaggcttctcattgat |
31044633 |
T |
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