View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19742_low_28 (Length: 280)

Name: NF19742_low_28
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19742_low_28
NF19742_low_28
[»] chr3 (11 HSPs)
chr3 (8-260)||(20202173-20202425)
chr3 (8-258)||(20199991-20200241)
chr3 (12-260)||(53949458-53949710)
chr3 (12-260)||(47168007-47168255)
chr3 (92-252)||(47168927-47169085)
chr3 (192-260)||(53949945-53950013)
chr3 (192-251)||(38798380-38798439)
chr3 (212-263)||(51829373-51829424)
chr3 (212-264)||(28908538-28908590)
chr3 (212-264)||(30834319-30834371)
chr3 (192-264)||(41710065-41710136)
[»] chr2 (12 HSPs)
chr2 (8-256)||(42848841-42849089)
chr2 (8-256)||(39628861-39629110)
chr2 (96-252)||(2477730-2477884)
chr2 (12-252)||(13328492-13328739)
chr2 (93-252)||(13327872-13328032)
chr2 (192-256)||(39629382-39629446)
chr2 (92-252)||(2477331-2477495)
chr2 (192-256)||(42849366-42849430)
chr2 (192-264)||(44928996-44929068)
chr2 (192-251)||(8911705-8911764)
chr2 (192-251)||(20203168-20203227)
chr2 (208-264)||(121420-121476)
[»] chr4 (12 HSPs)
chr4 (8-256)||(45919635-45919882)
chr4 (12-256)||(41695508-41695755)
chr4 (12-260)||(46618470-46618723)
chr4 (95-252)||(46619401-46619555)
chr4 (192-256)||(45920155-45920219)
chr4 (198-256)||(29212118-29212176)
chr4 (195-256)||(41695991-41696052)
chr4 (196-252)||(4157899-4157955)
chr4 (192-254)||(4158479-4158541)
chr4 (196-263)||(24377822-24377889)
chr4 (208-250)||(42882878-42882920)
chr4 (192-252)||(42058612-42058671)
[»] chr1 (19 HSPs)
chr1 (8-255)||(5497002-5497249)
chr1 (8-255)||(47374528-47374774)
chr1 (12-252)||(39847935-39848172)
chr1 (92-252)||(39848646-39848805)
chr1 (12-252)||(7012092-7012337)
chr1 (92-251)||(7012802-7012962)
chr1 (192-256)||(47374168-47374232)
chr1 (192-255)||(5496670-5496733)
chr1 (216-264)||(42986872-42986920)
chr1 (208-264)||(21790866-21790922)
chr1 (225-256)||(10716795-10716826)
chr1 (196-263)||(26213035-26213102)
chr1 (208-251)||(29859045-29859088)
chr1 (194-264)||(46284870-46284940)
chr1 (212-264)||(6690416-6690468)
chr1 (192-264)||(14886698-14886769)
chr1 (191-251)||(29859531-29859591)
chr1 (208-264)||(44234547-44234603)
chr1 (196-252)||(51446979-51447035)
[»] chr7 (18 HSPs)
chr7 (12-256)||(8487494-8487740)
chr7 (16-252)||(31179611-31179849)
chr7 (25-254)||(28451250-28451481)
chr7 (92-252)||(38059975-38060135)
chr7 (183-256)||(8513322-8513395)
chr7 (92-252)||(31178768-31178927)
chr7 (12-121)||(8513170-8513280)
chr7 (191-260)||(25245528-25245597)
chr7 (192-256)||(8512828-8512892)
chr7 (192-264)||(21866251-21866323)
chr7 (197-256)||(8487153-8487212)
chr7 (12-80)||(38060735-38060803)
chr7 (39-252)||(21865694-21865911)
chr7 (192-264)||(26774110-26774182)
chr7 (192-251)||(30660377-30660436)
chr7 (105-170)||(21866170-21866235)
chr7 (192-264)||(3475018-3475089)
chr7 (192-264)||(43334595-43334666)
[»] scaffold0009 (2 HSPs)
scaffold0009 (12-255)||(105635-105881)
scaffold0009 (192-260)||(106157-106225)
[»] scaffold0188 (1 HSPs)
scaffold0188 (12-251)||(25743-25985)
[»] scaffold0853 (2 HSPs)
scaffold0853 (12-252)||(2013-2252)
scaffold0853 (12-260)||(730-984)
[»] chr5 (7 HSPs)
chr5 (12-252)||(21146064-21146303)
chr5 (12-252)||(42520745-42520985)
chr5 (12-252)||(23205881-23206122)
chr5 (92-252)||(42521459-42521619)
chr5 (114-256)||(21147887-21148029)
chr5 (192-264)||(31218811-31218883)
chr5 (208-264)||(42519756-42519812)
[»] chr8 (11 HSPs)
chr8 (12-252)||(5331022-5331261)
chr8 (12-252)||(29267542-29267785)
chr8 (92-264)||(29266278-29266453)
chr8 (92-252)||(5331939-5332101)
chr8 (192-256)||(29361938-29362002)
chr8 (92-172)||(42987260-42987340)
chr8 (208-264)||(36731968-36732024)
chr8 (219-264)||(37438011-37438056)
chr8 (210-251)||(25191395-25191436)
chr8 (219-264)||(39861546-39861591)
chr8 (212-264)||(5882299-5882351)
[»] scaffold0301 (2 HSPs)
scaffold0301 (191-260)||(20848-20917)
scaffold0301 (92-138)||(21398-21444)
[»] chr6 (6 HSPs)
chr6 (208-264)||(19653748-19653804)
chr6 (192-252)||(18153384-18153444)
chr6 (191-250)||(32907555-32907614)
chr6 (191-244)||(18154331-18154384)
chr6 (192-264)||(8993453-8993524)
chr6 (192-264)||(9017900-9017971)
[»] scaffold0155 (1 HSPs)
scaffold0155 (208-264)||(1665-1721)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 20202425 - 20202173
Alignment:
Q  8 tagcataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnn-tggcaattagattttg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |         |||||||||| |||||    
T  20202425 tagcataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaaccagtggtatagcaaaaaataatggcaattaggttttg 20202326  T
Q  107 gagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttggaaag 206  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |        ||||||||||||||||||| ||||    
T  20202325 gagtaatgaaataagggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttca-taaaaaaaatagaatattagaatttttgaaaag 20202227  T
Q  207 gaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatca 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20202226 gaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatca 20202173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 20200241 - 20199991
Alignment:
Q  8 tagcataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnn-tggcaattagattttg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |         |||||||||| |||||    
T  20200241 tagcataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaaccagtggtatagcaaaaaataatggcaattaggttttg 20200142  T
Q  107 gagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttggaaag 206  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |        ||||||||||||||||||| ||||    
T  20200141 gagtaatgaaataagggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttca-taaaaaaaatagaatattagaatttttgaaaag 20200043  T
Q  207 gaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggat 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20200042 gaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggat 20199991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 53949710 - 53949458
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaact-agtggtataacnnnnnnnntggcaattagattttggagt 110  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||   |||| | || |        |||||||||| |||||||||    
T  53949710 ataggaaaagataagatggaaggtgtaacggtgaatagcttgggaagtgaagcataaaaacagtgatgtagcaaaaaaaatggcaattaggttttggagt 53949611  T
Q  111 aatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttc---attnnnnnnnntagaatattagaatttttggaaagg 207  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   |          ||||||||||||||||||||||||     
T  53949610 aatgaaataggggtaaatcatgtgcaagagagccctaagaataaacgatgtagaatccttcacaaaaaaaaaatatagaatattagaatttttggaaagc 53949511  T
Q  208 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatca 260  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53949510 aattaaccaaaagaaaaaagaataaattatttctaaaaataaaagatggatca 53949458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 47168255 - 47168007
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnnt-------ggcaattagattt 104  Q
    |||||||||||||||||||||| ||| ||  ||||||||||||||||||||| ||||| |||||||||| |                ||||||||| |||    
T  47168255 ataggaaaagagaagatggaagttgtgattttgaatagcttgggaagtgaaggataaaatagtggtatagcaaaaaaaaaaaaaaaaggcaattaggttt 47168156  T
Q  105 tggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttggaa 204  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| |||   |          ||||||||||||||||||| ||    
T  47168155 tggagtaatgaaataggg-taaatcatgtgcaagagagtcctaagaataaacgatgtagagtccacaa------aatatagaatattagaatttttgaaa 47168063  T
Q  205 aggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatca 260  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47168062 aggatttaaccaaaagaagaaagaataaattatttctaaaaataaaaggtggatca 47168007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 92 - 252
Target Start/End: Original strand, 47168927 - 47169085
Alignment:
Q  92 ggcaattagattttggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatatt 191  Q
    ||||||||| |||||||||||||| |||||| ||| |||||||||||||| |||||||||||||| ||||||||||||| |          ||||||       
T  47168927 ggcaattaggttttggagtaatgagataggg-taactcatgtgcaagagagccctaagaataaac-atgtagaatccttaaaaaaaaaaaatagaatgag 47169024  T
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47169025 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 47169085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 53949945 - 53950013
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatca 260  Q
    |||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||    
T  53949945 agaagttttggaaaggaattaaccgaaagaataaaaaataaattatttctaaaaataaaagatggatca 53950013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 38798439 - 38798380
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaa 251  Q
    ||||||||||| ||  |||||| ||||| ||||||||||||||| ||||||||| |||||    
T  38798439 agaatttttggtaaataattaatcaaaaaaagaaagaataaattgtttctaaaattaaaa 38798380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 51829373 - 51829424
Alignment:
Q  212 aaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcattt 263  Q
    |||||| | ||||||||||||||||||||||||| |||||  ||||||||||    
T  51829373 aaccaagaaaagaaagaataaattatttctaaaattaaaatttggatcattt 51829424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 28908538 - 28908590
Alignment:
Q  212 aaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |||||| | ||||||||||||||||||||||||| |||||  ||||| |||||    
T  28908538 aaccaagaaaagaaagaataaattatttctaaaattaaaatttggataatttg 28908590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 30834319 - 30834371
Alignment:
Q  212 aaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |||||| | ||||||||||||||||||||||||| |||||  ||||| |||||    
T  30834319 aaccaagaaaagaaagaataaattatttctaaaattaaaatttggataatttg 30834371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 41710065 - 41710136
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    ||||||||||| ||  |||||| ||||| ||||||||||||||| ||||||||| |||||  | |||||||||    
T  41710065 agaatttttggtaaataattaatcaaaa-aagaaagaataaattgtttctaaaattaaaatttagatcatttg 41710136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 42849089 - 42848841
Alignment:
Q  8 tagcataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnntggcaattagattttgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |        |||||||||| ||||||    
T  42849089 tagcataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaaacagtggtatagcaaaaaatatggcaattaggttttgg 42848990  T
Q  108 agtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttggaaagg 207  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||||||||||||| |    
T  42848989 agtaatgaaataggggtaaatcctgtgcaagagagccctaagaataaacgatgtagaatccttcataaaaaaaaatagaatattagaatttttggaaaag 42848890  T
Q  208 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42848889 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 42848841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 39629110 - 39628861
Alignment:
Q  8 tagcataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnntggcaattagattttgg 107  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| |        |||||||||| ||||||    
T  39629110 tagcataggaaaagagaagatgaaaggtgtaatggtgaatagcttgggaagtgaagcataaatcagtggtatagcaaaaaaattggcaattaggttttgg 39629011  T
Q  108 agtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcat-tnnnnnnnntagaatattagaatttttggaaag 206  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||    
T  39629010 agtaatgaaataggggtaaatcatgtgcaaaagaaccctaagaataaacgatgtagaatccttcataaaaaaaaaatagaatattagaatttttggaaag 39628911  T
Q  207 gaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39628910 gaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 39628861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 2477730 - 2477884
Alignment:
Q  96 attagattttggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaa 195  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||          |||||||||||||    
T  2477730 attaggtttttgagtaatgaaataggggtaaatcatgtgcaagagagtcctaagaataaacgatgtagagtccttca--aaaaaatatagaatattagaa 2477827  T
Q  196 tttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    |||||||||||||||||| |||||||||||||  |||||||||||||||| ||||||    
T  2477828 tttttggaaaggaattaatcaaaagaagaaagtttaaattatttctaaaattaaaag 2477884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 13328492 - 13328739
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnnt---ggcaattagattttgga 108  Q
    |||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||| || ||||||| |        |   | ||||| | |||||||    
T  13328492 ataggaaaagagaagatggaagttgtgatgttgaatagtttgggaagtgaagcataaaatactggtatagcaaaaaaaattacgacaattggcttttgga 13328591  T
Q  109 gtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcat-----tnnnnnnnntagaatattagaatttttgga 203  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||||||||||      |        ||||||   ||||||| ||||    
T  13328592 gtaatgaaataggggtaactcatgtgcaagagagacctaagaataaac-atgtagaatccttcaacaaaataaaaaaaatagaatcagagaatttctgga 13328690  T
Q  204 aaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13328691 aaggaattaaccaaaagaagaaagaataaattatttttaaaaataaaag 13328739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 93 - 252
Target Start/End: Complemental strand, 13328032 - 13327872
Alignment:
Q  93 gcaattagattttggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnn--tagaatat 190  Q
    |||||| | ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| |            ||||||      
T  13328032 gcaattgggttttggagtaatgaaataggggtaactcatgtgcaagagagccctaagaataaac-atgtagaatccttaaaaaaaaaaaaaatagaatca 13327934  T
Q  191 tagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13327933 gagaatttttggaaaggaattaaccaaaagaagaaataataaattatttctaaaaataaaag 13327872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 39629382 - 39629446
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39629382 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 39629446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 252
Target Start/End: Complemental strand, 2477495 - 2477331
Alignment:
Q  92 ggcaattagattttggagt-aatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnn----taga 186  Q
    ||||||||  ||||||||| |||||||||||||||| |||||||||| ||| |||||||||||||| |||||||||| ||||              ||||    
T  2477495 ggcaattaagttttggagttaatgaaataggggtaactcatgtgcaaaagagccctaagaataaac-atgtagaatctttcaaaaaaaataaaaaataga 2477397  T
Q  187 atattagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    ||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2477396 atcagagaatttttggaaaggaattaaccaaaaggagaaagaataaattatttctaaaaataaaag 2477331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 42849366 - 42849430
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42849366 agaatttttggaaaggaattaaccaaaagaaaaaagaataaattatttctaaaaataaaagatgg 42849430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 44928996 - 44929068
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |||||||| |||||| |||||| ||| |||||||| |||||||||||||||||| |||||| ||| |||||||    
T  44928996 agaattttcggaaagtaattaatcaagagaagaaataataaattatttctaaaattaaaaggtgggtcatttg 44929068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 8911705 - 8911764
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaa 251  Q
    ||||||||||| ||  |||||| ||||| ||||||||||||||| ||||||||| |||||    
T  8911705 agaatttttggtaaataattaatcaaaaaaagaaagaataaattgtttctaaaattaaaa 8911764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 20203168 - 20203227
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaa 251  Q
    ||||||||||| ||  |||||| ||||| ||||||||||||||| ||||||||| |||||    
T  20203168 agaatttttggtaaataattaatcaaaaaaagaaagaataaattgtttctaaaattaaaa 20203227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 121476 - 121420
Alignment:
Q  208 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |||||||||| |||||||||||||  |||||||||||| |||||  || ||||||||    
T  121476 aattaaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttg 121420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 45919882 - 45919635
Alignment:
Q  8 tagcataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnntggcaattagattttgg 107  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||| |        |||||||||| ||||||    
T  45919882 tagcataggaaaagagaagatgaaaggtgtaatggtgaatagcttgggaagtgaagcataagtcagtggtatagcaaaaaaattggcaattaggttttgg 45919783  T
Q  108 agtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttggaaagg 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||    
T  45919782 agtaatgaaataggggtaaatcatgtgcaaaagaaccctaagaataaacgatgtagaatccttca-taaaaaaaatagaatattagaatttttggaaagg 45919684  T
Q  208 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45919683 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 45919635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 41695755 - 41695508
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnn-tggcaattagattttggagt 110  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||    ||||||| |         |||||||||| |||||||||    
T  41695755 atagaaaaagagaagatggaagatgtaatggtgaatagctagggaggtgaagcataaaaccttggtatagcaaaaaaaaatggcaattaggttttggagt 41695656  T
Q  111 aatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcat--tnnnnnnnntagaatattagaatttttggaaagga 208  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||           ||||| |||||||||||||||||| |    
T  41695655 aatgaaataggggtaaattatgtgcaagagagccctaagaataaacgatatagaatccttcataaaaaaaaatatagaacattagaatttttggaaagaa 41695556  T
Q  209 attaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  41695555 attaaccaaaagaaaaaagaataaattatttctaaaaataaaaaatgg 41695508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 46618723 - 46618470
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnnt---------ggcaattagat 102  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||| |                  ||||||||| |    
T  46618723 ataggaaaagagaagatggaagttgtgatgttgaatagcttgggaagtgaagcataaaatagtggtatagcaaaaaaaaaaaaagacaaggcaattaggt 46618624  T
Q  103 tttggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttgg 202  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||| |||||| ||||||| |||||||          |||||||||||||||||||     
T  46618623 tttggagtaatgaaataggg-taaatcatgtgcaagagagtcctaaggataaacaatgtagagtccttca---aaaaatatagaatattagaatttttga 46618528  T
Q  203 aaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatca 260  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  46618527 aaaggatttaaccaaaagaagaaagaataaattatttctaaaaataaaatgtggatca 46618470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 95 - 252
Target Start/End: Original strand, 46619401 - 46619555
Alignment:
Q  95 aattagattttggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattaga 194  Q
    |||||| |||||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||||||||| |          ||||||   |||    
T  46619401 aattaggttttggagtaatgagataggggtaactcatgtgcaagagagccctaagaataaac-atgtagaatccttaa--aaaaaaaatagaatcagaga 46619497  T
Q  195 atttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46619498 atttttggaaaggaattaaccaaaagaagaaaaaataaattatttctaaaaataaaag 46619555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 45920155 - 45920219
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45920155 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 45920219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 29212176 - 29212118
Alignment:
Q  198 tttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  29212176 tttggaaaggaattaatcaaaagaagaaataataaattatttctaaaaataaaagatgg 29212118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 41695991 - 41696052
Alignment:
Q  195 atttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||| |||||    
T  41695991 atttttggaaaggaattaatcaaaagaagaaagaataaattattttaaaaaataaaggatgg 41696052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 4157955 - 4157899
Alignment:
Q  196 tttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    ||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||||    
T  4157955 tttttggaaagtaattaacgaagagaagaaagaataaattatttctaaaattaaaag 4157899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 4158479 - 4158541
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagat 254  Q
    ||||||||  ||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  4158479 agaattttcagaaagtaattaaccaagagatgaaagaataaattatttctaaaattaaaagat 4158541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 24377822 - 24377889
Alignment:
Q  196 tttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcattt 263  Q
    ||||| ||||| ||||||| || ||||||||||||| ||| ||||||||| |||||| ||| ||||||    
T  24377822 tttttagaaagtaattaactaagagaagaaagaatagattgtttctaaaattaaaaggtggttcattt 24377889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 42882920 - 42882878
Alignment:
Q  208 aattaaccaaaagaagaaagaataaattatttctaaaaataaa 250  Q
    |||||||||| |||||||| |||||||||||||||||| ||||    
T  42882920 aattaaccaatagaagaaaaaataaattatttctaaaattaaa 42882878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 42058671 - 42058612
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    ||||||||||||||  ||||||  ||| |||||||||||||||||||| ||||| ||||||    
T  42058671 agaatttttggaaaataattaagtaaa-gaagaaagaataaattatttttaaaattaaaag 42058612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 5497002 - 5497249
Alignment:
Q  8 tagcataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnntggcaattagattttgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||| |        |||||||||| ||||||    
T  5497002 tagcataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaaacaatggtatagcaaaaaaaatggcaattaggttttgg 5497101  T
Q  108 agtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttggaaagg 207  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||     
T  5497102 agtaatgaaataggggtaaatcatgtgcaagatagccctaagaataaacgatgtagaatccttcataaaaaaaaatagaatattagaatttttggaaaga 5497201  T
Q  208 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatg 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5497202 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatg 5497249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 47374528 - 47374774
Alignment:
Q  8 tagcataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnntggcaattagattttgg 107  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |        |||||||||| ||||||    
T  47374528 tagcataggaaaagagaagatgaaaggtgtaatggtgaatagcttgggaagtgaagcataaaccagtggtatagcaaaaaaattggcaattaggttttgg 47374627  T
Q  108 agtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttggaaagg 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |        ||||||||||||||||||||||| |    
T  47374628 agtaatgaaataggggtaaatcatgtgcaaaagaaccctaagaataaacgatgtagaatccttca-taaaaaaaatagaatattagaatttttggaaaag 47374726  T
Q  208 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatg 255  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  47374727 aattaaccaaaagaagaaagaataaattatttataaaaataaaagatg 47374774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 39848172 - 39847935
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnntggcaattagattttggagta 111  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||| |        |||||||||| |||| |||||    
T  39848172 ataggaaaagagaagatggaagttgtgatgttgaatagcttgggaagtgaagcataaaatagtggtatagcaaaaaaaatggcaattaggttttagagta 39848073  T
Q  112 atgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttggaaaggaatt 211  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| ||||| ||||| |          ||||||||||| |||||||||||||||||    
T  39848072 atgaaataggggtaaatcatgtgcaagagagtcctaagaataaacgacgtagagtccttaa---aaaaatatagaatattaggatttttggaaaggaatt 39847976  T
Q  212 aaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  39847975 aaccaaaagaagaaagaataaattatttttaaaaataaaag 39847935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 92 - 252
Target Start/End: Original strand, 39848646 - 39848805
Alignment:
Q  92 ggcaattagattttggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatatt 191  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||          ||||||       
T  39848646 ggcaattaagttttggagtaatgaaataggggtaactcatgtgcaagagagccctaagaataaac-atgtagaatccttcaaaaaaaaaaatagaatcag 39848744  T
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39848745 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 39848805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 7012337 - 7012092
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnnt---ggcaattagattttgga 108  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| || ||||||| |        |   | ||||| | |||||||    
T  7012337 ataggaaaagagaagatggaagttgtgatgttgaatagcttgggaagtgaagcataaaatactggtatagcaaaaaaaattacgacaattggcttttgga 7012238  T
Q  109 gtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttc----attnnnnnnnntagaatattagaatttttggaa 204  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||    |          ||||||   |||||||||||||    
T  7012237 gtaatgaaataggggtaactcatgtgcaagagagccctaagaataaac-atgtagaatccttcaacaaaaaaaaaaaatagaatcagagaatttttggaa 7012139  T
Q  205 aggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7012138 aggaattaaccaaaagaag-aagaataaattatttctaaaaataaaag 7012092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 251
Target Start/End: Original strand, 7012802 - 7012962
Alignment:
Q  92 ggcaattagattttggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatcctt--cattnnnnnnnntagaata 189  Q
    ||||||| | ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||   |          ||||||     
T  7012802 ggcaattgggttttggagtaatgaaataggggtaactcatgtgcaagagagccctaagaataaac-atgtagaatccttaaaaaaaaaaaaaatagaatc 7012900  T
Q  190 ttagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaa 251  Q
      |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7012901 agagaattttttaaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaa 7012962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 47374232 - 47374168
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47374232 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 47374168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 5496733 - 5496670
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatg 255  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5496733 agaattttttgaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatg 5496670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 42986920 - 42986872
Alignment:
Q  216 aaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||||||    
T  42986920 aaaagaagaaagaataaattatttttaaaattaaaaggtggatcatttg 42986872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 21790922 - 21790866
Alignment:
Q  208 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |||||||||| |||||||||||| |||||||||||||| |||||  ||| |||||||    
T  21790922 aattaaccaagagaagaaagaattaattatttctaaaattaaaatttggctcatttg 21790866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 256
Target Start/End: Complemental strand, 10716826 - 10716795
Alignment:
Q  225 aagaataaattatttctaaaaataaaagatgg 256  Q
    ||||||||||||||||||||||||||||||||    
T  10716826 aagaataaattatttctaaaaataaaagatgg 10716795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 26213102 - 26213035
Alignment:
Q  196 tttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcattt 263  Q
    ||||| ||||| ||||||| || ||||||||||||| ||| ||||||||| |||||| ||| ||||||    
T  26213102 tttttagaaagtaattaactaagagaagaaagaatagattgtttctaaaattaaaaggtggctcattt 26213035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 29859088 - 29859045
Alignment:
Q  208 aattaaccaaaagaagaaagaataaattatttctaaaaataaaa 251  Q
    ||||||| || ||||||||||||||||||||||||||| |||||    
T  29859088 aattaactaagagaagaaagaataaattatttctaaaattaaaa 29859045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 46284940 - 46284870
Alignment:
Q  194 aatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    ||||||||| ||  |||||||||| |||||||||||||  |||||||||||| |||||  || ||||||||    
T  46284940 aatttttggtaaataattaaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttg 46284870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 6690468 - 6690416
Alignment:
Q  212 aaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |||||| | |||||| |||||||||||||||||| |||||  |||||||||||    
T  6690468 aaccaagaaaagaaataataaattatttctaaaattaaaatttggatcatttg 6690416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 14886698 - 14886769
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    ||||||||||| ||  |||||| ||||| ||||||||||||||| ||||||||| |||||  | |||||||||    
T  14886698 agaatttttggtaaataattaatcaaaa-aagaaagaataaattgtttctaaaattaaaatttagatcatttg 14886769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 29859531 - 29859591
Alignment:
Q  191 tagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaa 251  Q
    ||||||||||||  |  |||||| ||||| ||||||||||||||||||| ||||| |||||    
T  29859531 tagaatttttggtgaataattaatcaaaacaagaaagaataaattatttttaaaattaaaa 29859591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 44234547 - 44234603
Alignment:
Q  208 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |||||||||| |||| ||| |||||||||||||||||| |||||   ||||||||||    
T  44234547 aattaaccaagagaaaaaataataaattatttctaaaattaaaattcggatcatttg 44234603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 51447035 - 51446979
Alignment:
Q  196 tttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    ||||| ||||| ||||||| || ||||||||||||| ||| ||||||||| ||||||    
T  51447035 tttttagaaagtaattaactaagagaagaaagaatagattgtttctaaaattaaaag 51446979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 8487494 - 8487740
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnntggcaattagattttggagta 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |        |||||||||| ||||||||||    
T  8487494 ataggaaaagataagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaaacagtggtatagcaaaaaaaatggcaattaggttttggagta 8487593  T
Q  112 atgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcat--tnnnnnnnntagaatattagaatttttggaaaggaa 209  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||           ||||||| |||||||||||||||| ||    
T  8487594 atgaaataggggtaaatcatgtgcaagagagccctaagaataaacgatgtagaatccttcataaaaaaatatatagaataatagaatttttggaaagcaa 8487693  T
Q  210 ttaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8487694 ttaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 8487740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 31179611 - 31179849
Alignment:
Q  16 gaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnn----tggcaattagattttggagta 111  Q
    |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||| |            |||||||||| ||||||||||    
T  31179611 gaaaagagaagatggaagttgtgatgttgaatagcttgggaagtgaagcataaaatagtggtatagcaacaaaaaaaaatggcaattaggttttggagta 31179710  T
Q  112 atgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttggaaaggaatt 211  Q
    |||||||| |||||||||||||||||||||   |||| ||||||||||||||| |||||||          |||||||||||||| ||||||||||||||    
T  31179711 atgaaatatgggtaaatcatgtgcaagagagttctaaaaataaacgatgtagagtccttca--aaaaaatatagaatattagaatctttggaaaggaatt 31179808  T
Q  212 aaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31179809 aaccaaaagaagaaagaataaattatttctaaaaataaaag 31179849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 254
Target Start/End: Complemental strand, 28451481 - 28451250
Alignment:
Q  25 agatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnn--tggcaattagattttggagtaatgaaataggg 122  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||  | ||||||| |          |||||||||| |||||||||||||||| ||||    
T  28451481 agatggatggtgtaatggtgaatagcttgggaagtgaagtataaaacactggtatagcaaaaaaaaaatggcaattaggttttggagtaatgaaacaggg 28451382  T
Q  123 gtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnn-tagaatattagaatttttggaaaggaattaaccaaaaga 221  Q
    ||||||| | ||||||||| |||||||| | ||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  28451381 gtaaatcgtatgcaagagatccctaaga-tcaacgatgtagaatccttcataaaaaaaatatagaatattagaatttttggaaaggaattaaccaaaaga 28451283  T
Q  222 agaaagaataaattatttctaaaaataaaagat 254  Q
    ||||||||| |||||||||||||||||||||||    
T  28451282 agaaagaatgaattatttctaaaaataaaagat 28451250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 92 - 252
Target Start/End: Complemental strand, 38060135 - 38059975
Alignment:
Q  92 ggcaattagattttggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnn--tagaata 189  Q
    ||||||||| |||||||||||||| |||||| ||| |||||||||||||| |||||||||||||| ||||||||||||| |            ||||||     
T  38060135 ggcaattaggttttggagtaatgagataggg-taactcatgtgcaagagagccctaagaataaac-atgtagaatccttaaaaaaaaaaaaaatagaatc 38060038  T
Q  190 ttagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38060037 agagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 38059975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 8513322 - 8513395
Alignment:
Q  183 tagaatattagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8513322 tagaatattagaatttttggaaagcaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 8513395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 92 - 252
Target Start/End: Complemental strand, 31178927 - 31178768
Alignment:
Q  92 ggcaattagattttggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttc-attnnnnnnnntagaatat 190  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||  ||||||||||||  |||||||||||||| |          ||||||      
T  31178927 ggcaattagattttggagtaatgaaataggggtaactcatgtgcatgagagtcctaagaataaa-tatgtagaatccttcaaaaaaaaaaaatagaattg 31178829  T
Q  191 tagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
     |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  31178828 gagaatttttggaaatgaattaaccaaaagaagaaagaat-aattatttctaaaaataaaag 31178768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 8513170 - 8513280
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataac-nnnnnnnntggcaattagattttggagt 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |         |||||||||| |||||||||    
T  8513170 ataggaaaagataagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaaacagtggtatagcaaaaaaaaatggcaattaggttttggagt 8513269  T
Q  111 aatgaaatagg 121  Q
    |||||||||||    
T  8513270 aatgaaatagg 8513280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 25245528 - 25245597
Alignment:
Q  191 tagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatca 260  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  25245528 tagaatttttgaaaagaaattaaccaaaagaagaaagaataaattatttctaaaattaaaaggtggatca 25245597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 8512892 - 8512828
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8512892 agaagttttgaaaaggaattaaccaaaagaataaagaataaattatttctaaaaataaaagatgg 8512828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 21866251 - 21866323
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||| |||||||    
T  21866251 agaatttttggaaaggaataaaccaaaagaagaaagaataaattatttttaaaattaaaaggtgggtcatttg 21866323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 8487212 - 8487153
Alignment:
Q  197 ttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8487212 ttttgaaaaggaattaaccaaaagaacaaagaataaattatttctaaaaataaaagatgg 8487153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 38060735 - 38060803
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtata 80  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||||||||| ||||| ||||||||||    
T  38060735 ataggaaaagagaagatggaagttgtgatgttgaatagcttgggaagtgaaggataaaatagtggtata 38060803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 252
Target Start/End: Complemental strand, 21865911 - 21865694
Alignment:
Q  39 atggtgaatagcttgggaagtgaagcataaactagtggtat--aacnnnnnnnntggcaattagattttggagtaatgaaataggggtaaatcatgtgca 136  Q
    ||||||||||||||||||||| ||||||||| || ||||||  ||          ||||||||| |||||||||||||||||| ||||||| ||||||||    
T  21865911 atggtgaatagcttgggaagtaaagcataaaatactggtatagaaaaaaaatatcggcaattaggttttggagtaatgaaata-gggtaaaacatgtgca 21865813  T
Q  137 agagaaccctaagaataaacgatgtagaatccttc---attnnnnnnnntagaatattagaatttttggaaaggaattaaccaaaagaagaaagaataaa 233  Q
    ||||| ||||||  |||| | ||||||||||||||   |          || |||   |||||||||| ||| ||||||| |||||||||||||||||||    
T  21865812 agagagccctaatcataagccatgtagaatccttcaaaaaataataatataaaatcacagaatttttgaaaatgaattaatcaaaagaagaaagaataaa 21865713  T
Q  234 ttatttctaaaaataaaag 252  Q
    |||||| ||||| ||||||    
T  21865712 ttatttttaaaattaaaag 21865694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 26774182 - 26774110
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    ||||||||||| ||  |||||| ||||| ||||||||||||||||||||||||| |||||  | |||||||||    
T  26774182 agaatttttggtaaataattaatcaaaaaaagaaagaataaattatttctaaaattaaaatttagatcatttg 26774110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 30660377 - 30660436
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaa 251  Q
    ||||||||||| ||  |||||| ||||| ||||||||||||||| ||||||||| |||||    
T  30660377 agaatttttggtaaataattaatcaaaaaaagaaagaataaattgtttctaaaattaaaa 30660436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 21866170 - 21866235
Alignment:
Q  105 tggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatcctt 170  Q
    |||||||||||||||||| ||||  ||||||| || | |||||| ||||| ||| |||||||||||    
T  21866170 tggagtaatgaaatagggataaagtatgtgcatgaaagccctaataataagcgacgtagaatcctt 21866235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 3475089 - 3475018
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    ||||||||||| ||  |||||| ||||| ||||||||||||||| ||||||||| |||||  | |||||||||    
T  3475089 agaatttttggtaaataattaatcaaaa-aagaaagaataaattgtttctaaaattaaaatttagatcatttg 3475018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 43334595 - 43334666
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    ||||||||||| ||  |||||| ||| ||||||||||| ||||| ||||||||| |||||  |||||||||||    
T  43334595 agaatttttggtaaataattaatcaagagaagaaagaa-aaattgtttctaaaattaaaatttggatcatttg 43334666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 105881 - 105635
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnntggcaattagattttggagta 111  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  | ||||||| |        |||||||||| ||||||||||    
T  105881 ataggaaaagataagaaggaaggtgtaatggtgaatagcttgggaagtgaagcataaaacaatggtatagcaaaaaaaatggcaattaggttttggagta 105782  T
Q  112 atgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcat---tnnnnnnnntagaatattagaatttttggaaagga 208  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||            |||||||||||||||||||||||| |    
T  105781 atgaaataggggtaaatcatgtgcaagagagccctaagaataaacgatgtagaatccttcataaaaaaaaaatatagaatattagaatttttggaaagca 105682  T
Q  209 attaaccaaaagaagaaagaataaattatttctaaaaataaaagatg 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  105681 attaaccaaaagaagaaagaataaattatttctaaaaataaaagatg 105635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 106157 - 106225
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatca 260  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  106157 agaagttttggaaaggaattaaccaaaagaataaagaataaattatttctaaaaataaaagatggatca 106225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 25985 - 25743
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnntggcaattagattttggagta 111  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||| |        |||||||||  ||||||||||    
T  25985 ataggaaaagagaagatggaaagtgtaatggtgaatagcttgggaagtgaagcataaaacagtggtatagcaaaaaaaatggcaattaagttttggagta 25886  T
Q  112 atgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnn---tagaatattagaatttttggaaagga 208  Q
    ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||    
T  25885 atgaaataggggtaaatcatgtgtaagaaagccctaagaataaacgatgtagaatccttcataaaaaaaaaatatagaatattagaatttttggaaagga 25786  T
Q  209 attaaccaaaagaagaaagaataaattatttctaaaaataaaa 251  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25785 attaaccaaaagaagaaagaataaattatttctaaaaataaaa 25743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 2013 - 2252
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnn-tggcaattagattttggagt 110  Q
    |||||||||||||||||||||| ||| ||| |||||||||||| |||||||||||||| |||||||||| |         ||||||||||||||||||||    
T  2013 ataggaaaagagaagatggaagttgtgatgttgaatagcttggtaagtgaagcataaaatagtggtatagcaaaaaaaaatggcaattagattttggagt 2112  T
Q  111 aatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttggaaaggaat 210  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||| |||| |||||||          |||||||||||||||||||||||| |||    
T  2113 aatgaaataagggtaaatcatgtgcaagagagtcctaagaataaacgatttagagtccttca--aaaaaatatagaatattagaatttttggaaagtaat 2210  T
Q  211 taaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2211 taaccaaaagaagaaagaataaattatttctaaaaataaaag 2252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 984 - 730
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnnt----ggcaattagattttgg 107  Q
    |||||||||||| |||| |||| ||| ||||||||||||||||||||| ||||||||| || | |||||||             ||||||||| ||||||    
T  984 ataggaaaagaggagatcgaagttgtgatggtgaatagcttgggaagttaagcataaaatactagtataacaaaaaagaattacggcaattaggttttgg 885  T
Q  108 agtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatatt---agaatttttggaa 204  Q
    ||||||||||||||||||| |||||||||||||| |||| | ||||||| |||||||||||||||           | || | |   |||||||||| ||    
T  884 agtaatgaaataggggtaactcatgtgcaagagagccctgaaaataaac-atgtagaatccttcaaaaaaaaaaaaaaaagaatcagagaatttttgaaa 786  T
Q  205 aggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatca 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  785 aggaattaaccaaaagaagaaagaataaattatttctaaaaataaaaggtggatca 730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 21146303 - 21146064
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnn-tggcaattagattttggagt 110  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||| |         |||||||||| |||||||||    
T  21146303 ataggaaaagagaagatggaagttgtgatgttgaatagcttgggaagtgaagcataaaatagtggtatagcaaaaaaaaatggcaattaggttttggagt 21146204  T
Q  111 aatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttggaaaggaat 210  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||          ||||||||||||||||||||||||||||    
T  21146203 aatgaaataggggtaaatcatgtgcaagagagtcctaagaataaacgatgtagagtccttca--aaataatatagaatattagaatttttggaaaggaat 21146106  T
Q  211 taaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    ||| |||||||||||||  |||||||||||||||||||||||    
T  21146105 taatcaaaagaagaaagtttaaattatttctaaaaataaaag 21146064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 42520985 - 42520745
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnn---tggcaattagattttgga 108  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||| |           |||||||||| |||||||    
T  42520985 ataggaaaagagaagatggaagttgtgatgttgaatagcttgggaagtgaagcataaaatagtggtatagcaaaaaaaaaaatggcaattaggttttgga 42520886  T
Q  109 gtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttggaaagga 208  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||| ||||| ||||| |          ||||||||||||||||||||||  ||    
T  42520885 gtaatgaaataggggtaaatcatgtgcaagagagtcctaagaataaacgacgtagagtccttaa---aaaaatatagaatattagaatttttggaagtga 42520789  T
Q  209 attaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42520788 attaaccaaaagaagaaagaataaattatttctaaaaataaaag 42520745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 23205881 - 23206122
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnntggcaattagattttggagta 111  Q
    |||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||| || | ||||| |         ||||||||| ||||||||||    
T  23205881 ataggaaaagaggagatcgaagttgtgatggtgaatagcttgggaagtgaagcataaaatactagtatagcaaaattac-ggcaattaggttttggagta 23205979  T
Q  112 atgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttc---attnnnnnnnntagaatattagaatttttggaaagga 208  Q
    ||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||   |          ||||||   | |||||||||||||||    
T  23205980 atgaaataggggtaactcatgtgcaagagagccctaagaataaac-atgtagaatccttcaaaaaaaaataaaatagaatcggataatttttggaaagga 23206078  T
Q  209 attaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  23206079 attaactaaaagaagaaagaataaattatttctaaaaataaaag 23206122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 92 - 252
Target Start/End: Original strand, 42521459 - 42521619
Alignment:
Q  92 ggcaattagattttggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttc-attnnnnnnnntagaatat 190  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |          ||||||      
T  42521459 ggcaattaggttttggagtaatgaaataggggtaactcatgtgcaagagaaccctaagaataaac-atgtagaatccttcaaaaaaaaaaaatagaatca 42521557  T
Q  191 tagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42521558 gagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 42521619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 114 - 256
Target Start/End: Original strand, 21147887 - 21148029
Alignment:
Q  114 gaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnn-tagaatattagaatttttggaaaggaatta 212  Q
    ||||||||||||| |||||||||| ||| |||||||||||||| |||||||||| ||||           ||||||   |||||| ||||||||||||||    
T  21147887 gaaataggggtaactcatgtgcaaaagagccctaagaataaac-atgtagaatctttcaacaaaaaaaaatagaatcacagaattattggaaaggaatta 21147985  T
Q  213 accaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  21147986 accaaaagaagaaagaataaattatttctaaaaataaaagatgg 21148029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 31218883 - 31218811
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    ||||||||||||||| |||||||||  || | |||||||||||||||||||||| |||||| ||| |||||||    
T  31218883 agaatttttggaaagcaattaaccattaggaaaaagaataaattatttctaaaattaaaaggtgggtcatttg 31218811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 42519812 - 42519756
Alignment:
Q  208 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |||||||||| |||||||||||||  |||||||||||| |||||  || ||||||||    
T  42519812 aattaaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttg 42519756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 5331261 - 5331022
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnn-tggcaattagattttggagt 110  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||| |         |||||||||| |||||||||    
T  5331261 ataggaaaagagaagatggaagttgtgatgttgaatagcttgggaagtgaagcataaaatagtggtatagcaaaaaaaaatggcaattaggttttggagt 5331162  T
Q  111 aatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttggaaaggaat 210  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||          ||||||||||||||||||| ||||||||    
T  5331161 aatgaaataggggtaaatcatgtgcaagagagtcctaagaataaacgatgtagagtccttca--aaaaaatatagaatattagaatttttgaaaaggaat 5331064  T
Q  211 taaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    ||| |||||||||||||  |||||||||||||||||||||||    
T  5331063 taatcaaaagaagaaagtttaaattatttctaaaaataaaag 5331022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 29267542 - 29267785
Alignment:
Q  12 ataggaaaagagaagatggaaggtgtaatggtgaatagcttgggaagtgaagcataaactagtggtataacnnnnnnnnt--------ggcaattagatt 103  Q
    |||||||||||||||||||||| ||| ||| |||||||||| |||||||||||||||| |||||||||| |                 ||||||||| ||    
T  29267542 ataggaaaagagaagatggaagttgtgatgttgaatagcttaggaagtgaagcataaaatagtggtatagcaaaaaaaaaaaaaaaaaggcaattaggtt 29267641  T
Q  104 ttggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnntagaatattagaatttttgga 203  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| |||||||          ||||||||||||||||||| |    
T  29267642 ttggagtaatgaaataggg-taaatcatgtgcaagagagtcctaagaataaacgatgtagagtccttca----aaaatatagaatattagaatttttgaa 29267736  T
Q  204 aaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  29267737 aaggatttaaccaaaagaagaaagaataaattatttctaataataaaag 29267785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 264
Target Start/End: Complemental strand, 29266453 - 29266278
Alignment:
Q  92 ggcaattagattttggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnn----tagaa 187  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| ||||||||| ||| |              |||||    
T  29266453 ggcaattagattttggagtaatgaaataagggtaactcatgtgcaagagagccctaagaataaac-atgtagaatgcttaaaaaaaaaaacaaaatagaa 29266355  T
Q  188 tattagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||    
T  29266354 tcagagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaaagtgggtcatttg 29266278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 252
Target Start/End: Original strand, 5331939 - 5332101
Alignment:
Q  92 ggcaattagattttggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttcattnnnnnnnn---tagaat 188  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||| |||||||||| ||||             ||||||    
T  5331939 ggcaattaagttttggagtaatgaaataggggtaactcatgtgcaaaagagccctaagaataaac-atgtagaatctttcaaaaaaaaaaaaaatagaat 5332037  T
Q  189 attagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
       |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  5332038 cagagaatttttggaaatgaattaactaaaagaagaaagaataaattatttctaaaaataaaag 5332101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 29362002 - 29361938
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29362002 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatgg 29361938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 42987260 - 42987340
Alignment:
Q  92 ggcaattagattttggagtaatgaaataggggtaaatcatgtgcaagagaaccctaagaataaacgatgtagaatccttca 172  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||| ||||| | |||||||||||||||    
T  42987260 ggcaattaggttttggagtaatgaaataggggcaaaacatgtgcaagagagccctaataataagccatgtagaatccttca 42987340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 36731968 - 36732024
Alignment:
Q  208 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |||||||||| ||||||||||||||||||||||||||| |||||  ||| |||||||    
T  36731968 aattaaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttg 36732024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 37438056 - 37438011
Alignment:
Q  219 agaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |||| |||||||||||||||||||||| |||||||||||| |||||    
T  37438056 agaaaaaagaataaattatttctaaaattaaaagatggataatttg 37438011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 25191395 - 25191436
Alignment:
Q  210 ttaaccaaaagaagaaagaataaattatttctaaaaataaaa 251  Q
    ||||| || ||||||||||||||||||||||||||| |||||    
T  25191395 ttaactaagagaagaaagaataaattatttctaaaattaaaa 25191436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 39861546 - 39861591
Alignment:
Q  219 agaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    ||||||||||||||||||||||||||| |||||  ||| |||||||    
T  39861546 agaagaaagaataaattatttctaaaattaaaatttggctcatttg 39861591  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 5882299 - 5882351
Alignment:
Q  212 aaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |||||| | ||||||||||||||||||| ||||| |||||  |||||||||||    
T  5882299 aaccaagaaaagaaagaataaattatttttaaaattaaaatttggatcatttg 5882351  T

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Target: scaffold0301 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 20917 - 20848
Alignment:
Q  191 tagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatca 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  20917 tagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaattaaaaggtggatca 20848  T

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Target: scaffold0301; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 21398 - 21444
Alignment:
Q  92 ggcaattagattttggagtaatgaaataggggtaaatcatgtgcaag 138  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  21398 ggcaattaggttttggagtaatgaaatatgggtaaaacatgtgcaag 21444  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 19653748 - 19653804
Alignment:
Q  208 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |||||||||| ||||||||||||||||||||||||||| |||||  |||||||||||    
T  19653748 aattaaccaagagaagaaagaataaattatttctaaaattaaaatttggatcatttg 19653804  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 18153444 - 18153384
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaag 252  Q
    ||||||||||||||| |||||| ||| ||||||||||||| | ||||||||||| ||||||    
T  18153444 agaatttttggaaagtaattaagcaagagaagaaagaatatagtatttctaaaattaaaag 18153384  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 32907614 - 32907555
Alignment:
Q  191 tagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaa 250  Q
    ||||||||||||  |  |||||| ||||| ||||||||||||||||||||||||| ||||    
T  32907614 tagaatttttggtgaataattaatcaaaacaagaaagaataaattatttctaaaattaaa 32907555  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 18154331 - 18154384
Alignment:
Q  191 tagaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaa 244  Q
    |||||||||  ||||| |||||||||| |||||||| || ||||||||||||||    
T  18154331 tagaattttctgaaagtaattaaccaagagaagaaaaaaaaaattatttctaaa 18154384  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 8993453 - 8993524
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    ||||||||||| ||  |||||| ||||| ||||||||||||||| ||||||||| |||||  | |||||||||    
T  8993453 agaatttttggtaaataattaatcaaaa-aagaaagaataaattgtttctaaaattaaaatttagatcatttg 8993524  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 9017900 - 9017971
Alignment:
Q  192 agaatttttggaaaggaattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    ||||||||||| ||  |||||| ||||| ||||||||||||||| ||||||||| |||||  | |||||||||    
T  9017900 agaatttttggtaaataattaatcaaaa-aagaaagaataaattgtttctaaaattaaaatttagatcatttg 9017971  T

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Target: scaffold0155 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 1665 - 1721
Alignment:
Q  208 aattaaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcatttg 264  Q
    |||||||||| |||||||||||||  |||||||||||| |||||  || ||||||||    
T  1665 aattaaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttg 1721  T

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