View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19742_low_3 (Length: 745)

Name: NF19742_low_3
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19742_low_3
NF19742_low_3
[»] chr7 (3 HSPs)
chr7 (65-302)||(19736912-19737149)
chr7 (65-303)||(23684201-23684439)
chr7 (262-306)||(11694793-11694837)
[»] chr4 (4 HSPs)
chr4 (457-744)||(56051972-56052261)
chr4 (122-304)||(31807806-31807991)
chr4 (176-245)||(5825391-5825460)
chr4 (262-303)||(30137130-30137171)
[»] chr6 (1 HSPs)
chr6 (575-744)||(9349697-9349866)
[»] chr5 (1 HSPs)
chr5 (122-297)||(14946716-14946894)
[»] chr3 (4 HSPs)
chr3 (152-302)||(49086080-49086230)
chr3 (189-243)||(46740500-46740554)
chr3 (262-303)||(4486632-4486673)
chr3 (177-245)||(8653640-8653711)
[»] chr8 (2 HSPs)
chr8 (176-245)||(788083-788152)
chr8 (262-303)||(26492030-26492071)
[»] scaffold0180 (1 HSPs)
scaffold0180 (189-243)||(22201-22255)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 65 - 302
Target Start/End: Complemental strand, 19737149 - 19736912
Alignment:
Q  65 agatcagacaatgaataatgcagatgtttcaatctgaaaattcggatgatttatggaagagtgtggaaaagggctgggtgttgttgatggtgggtgagag 164  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19737149 agatcagacaatgaatactgcagatgtttcaatctgaaaattcggatgatttatggaagagtgtggaaaagggctgggtgttgttgatggtgggtgagaa 19737050  T
Q  165 agaatagccgaagaagatagtgtaaaaaatctagtggtgagagtgtatgataagagtgtgtttctcatttcatccaatggtggaaataaaatttcctatg 264  Q
     |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  19737049 ggaatggccgaagaagatagtgtaaaaaatttagtggtgagagtgtatgataagagtgtgtttttcatttcatccaatggtggaaataaactttcctatg 19736950  T
Q  265 gtgcacaagttttacacttgtgcatcctaaatgtcacc 302  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  19736949 gtgcacaagttttacacttgtgcatcttaaatgccacc 19736912  T

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Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 65 - 303
Target Start/End: Original strand, 23684201 - 23684439
Alignment:
Q  65 agatcagacaatgaataatgcagatgtttcaatctgaaaattcggatgatttatggaagagtgtggaaaagggctgggtgttgttgatggtgggtgagag 164  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23684201 agatcagacaatgaataatgaggatgtttcaatctgaaaattcggatgatttatggaagagtgtggaaaagggctaggtgttgttgatggtgggtgagag 23684300  T
Q  165 agaatagccgaagaagatagtgtaaaaaatctagtggtgagagtgtatgataagagtgtgtttctcatttcatccaatggtggaaataaaatttcctatg 264  Q
    ||||| ||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  23684301 agaatggccgaagaagatagtgtaaaaaatctaatgtcgagagtgtatgataagagtgtgtttctcatctcatccaatggtggaaataaactttcctatg 23684400  T
Q  265 gtgcacaagttttacacttgtgcatcctaaatgtcacca 303  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  23684401 gtgcacatgttttacacctgtgcatcctaaatgtcacca 23684439  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 11694837 - 11694793
Alignment:
Q  262 atggtgcacaagttttacacttgtgcatcctaaatgtcaccactc 306  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||||    
T  11694837 atggtgcacaagtttaacacttgtgcatactaaatgccaccactc 11694793  T

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Target: chr4 (Bit Score: 179; Significance: 3e-96; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 457 - 744
Target Start/End: Original strand, 56051972 - 56052261
Alignment:
Q  457 tgggtaacttccactgtttggcaaagcgaagaaatacaagag--agaccaaaaatccatgggatccactaactttttgtttctctgctgttgagcgaaga 554  Q
    ||||||||||||||||||||||| | |  |||||||||||||  ||||||||||||||| ||| |||| |||||||||||||||| || |||||||||||    
T  56051972 tgggtaacttccactgtttggcataacatagaaatacaagagagagaccaaaaatccataggacccaccaactttttgtttctcttctcttgagcgaaga 56052071  T
Q  555 aagccaagagagatgaccaatgttttgcattttccatttataccctcgtcttcattgttcctctttttgcctaaaacttttgtacagtaaccaagctata 654  Q
    ||||||||||||||||||||| ||||||||| | | ||||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| |||||    
T  56052072 aagccaagagagatgaccaatattttgcattcttcgtttataccctcgtcttcattgcttctctttttgcctaaaacttttgcacagtgaccaaactata 56052171  T
Q  655 cttatatctacaatccagatcagtgagtcaccgaaacaccaaagatcacaataatcaccactacattatttctcaatattgttcgacatc 744  Q
    |||| |||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||||    
T  56052172 cttacatctactatccagatcagtgagtcatcgaaacaccaaagatcacaataataaccactacattatttctcaatgttcttcgccatc 56052261  T

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Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 122 - 304
Target Start/End: Original strand, 31807806 - 31807991
Alignment:
Q  122 agagtgtggaaaagggctgggtgttgttgatggtgggtgagagagaatagccgaagaagatagtgtaaaaaa---tctagtggtgagagtgtatgataag 218  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||| |  | ||||||||||| ||||||   ||||||||||||||||||||||||     
T  31807806 agagtgtggaaaatggcttggtgttgttgatggtgggtgagagagaatggttggagaagatagtggaaaaaaagatctagtggtgagagtgtatgataat 31807905  T
Q  219 agtgtgtttctcatttcatccaatggtggaaataaaatttcctatggtgcacaagttttacacttgtgcatcctaaatgtcaccac 304  Q
    ||||||||| | || |||||||||||| |||||||| ||||| ||| |||| ||||||||| |||||||| |||||||| ||||||    
T  31807906 agtgtgttttttatctcatccaatggtagaaataaattttcccatgatgcaaaagttttacgcttgtgcaccctaaatgccaccac 31807991  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 5825460 - 5825391
Alignment:
Q  176 agaagatagtgtaaaaaatctagtggtgagagtgtatgataagagtgtgtttctcatttcatccaatggt 245  Q
    ||||||||||||||||||||||||| |||||| ||| ||||| | |||||| ||||||| ||| ||||||    
T  5825460 agaagatagtgtaaaaaatctagtgttgagagagtaggataataatgtgttcctcatttgatctaatggt 5825391  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 30137171 - 30137130
Alignment:
Q  262 atggtgcacaagttttacacttgtgcatcctaaatgtcacca 303  Q
    ||||||||||||||| |||||||||||| ||||||| |||||    
T  30137171 atggtgcacaagtttaacacttgtgcattctaaatgccacca 30137130  T

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Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 575 - 744
Target Start/End: Complemental strand, 9349866 - 9349697
Alignment:
Q  575 tgttttgcattttccatttataccctcgtcttcattgttcctctttttgcctaaaacttttgtacagtaaccaagctatacttatatctacaatccagat 674  Q
    |||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  9349866 tgttttgcattttccatttataccattgtcttcattgctcctctttttgcctaaaacttttgtacagtgaccaagctatacttatatctactatccagat 9349767  T
Q  675 cagtgagtcaccgaaacaccaaagatcacaataatcaccactacattatttctcaatattgttcgacatc 744  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||||    
T  9349766 cagtgagtcaccaaaacaccaaagatcacaataatcaccactacattatttctcaatgttcttcgccatc 9349697  T

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Target: chr5 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 122 - 297
Target Start/End: Complemental strand, 14946894 - 14946716
Alignment:
Q  122 agagtgtggaaaagggctgggtgttgttgatggtgggtgagagagaatagccgaagaagatagtgtaaaaaa---tctagtggtgagagtgtatgataag 218  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| |  | ||||||||||||||||||   ||||||||||||||||| ||||||     
T  14946894 agagtgtggaaaagggcatggtgttgttgatggtgggtgagagagaatggttggagaagatagtgtaaaaaaagatctagtggtgagagtgtgtgataat 14946795  T
Q  219 agtgtgtttctcatttcatccaatggtggaaataaaatttcctatggtgcacaagttttacacttgtgcatcctaaatg 297  Q
    ||||||||| | ||||||||||||||| |||||||| ||| | ||||||||||||||||||  ||||||| ||||||||    
T  14946794 agtgtgttttttatttcatccaatggtagaaataaacttttccatggtgcacaagttttacgtttgtgcaccctaaatg 14946716  T

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Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 152 - 302
Target Start/End: Original strand, 49086080 - 49086230
Alignment:
Q  152 tggtgggtgagagagaatagccgaagaagatagtgtaaaaaatctagtggtgagagtgtatgataagagtgtgtttctcatttcatccaatggtggaaat 251  Q
    |||||||||||||||||| |  |  |||||||||||||||||| ||||||||| |||| ||||||| ||||||||| || ||| |||||||||| |||||    
T  49086080 tggtgggtgagagagaatggttggggaagatagtgtaaaaaatatagtggtgaaagtgcatgataatagtgtgtttttcttttaatccaatggtagaaat 49086179  T
Q  252 aaaatttcctatggtgcacaagttttacacttgtgcatcctaaatgtcacc 302  Q
    ||| ||||| ||||||||||| ||||||| |||||||||||||||| ||||    
T  49086180 aaactttcccatggtgcacaaattttacatttgtgcatcctaaatgccacc 49086230  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 46740500 - 46740554
Alignment:
Q  189 aaaaatctagtggtgagagtgtatgataagagtgtgtttctcatttcatccaatg 243  Q
    ||||||||| || |||| | ||||||||||||||||||| |||||| ||||||||    
T  46740500 aaaaatctaatgttgagggagtatgataagagtgtgtttttcatttaatccaatg 46740554  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 4486632 - 4486673
Alignment:
Q  262 atggtgcacaagttttacacttgtgcatcctaaatgtcacca 303  Q
    ||||||||||||||| ||||||||||| |||||||| |||||    
T  4486632 atggtgcacaagtttaacacttgtgcaccctaaatgccacca 4486673  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 8653640 - 8653711
Alignment:
Q  177 gaagatagtgtaaaaaat---ctagtggtgagagtgtatgataagagtgtgtttctcatttcatccaatggt 245  Q
    |||||||||||| |||||   |||||| |||| |  ||||||||||||||||||||||||| ||| ||||||    
T  8653640 gaagatagtgtagaaaatgatctagtgttgagggaatatgataagagtgtgtttctcatttgatcaaatggt 8653711  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 788152 - 788083
Alignment:
Q  176 agaagatagtgtaaaaaatctagtggtgagagtgtatgataagagtgtgtttctcatttcatccaatggt 245  Q
    ||||||||||||||||||| ||||| |||||| ||| ||||| | |||||| ||||||| ||| ||||||    
T  788152 agaagatagtgtaaaaaatttagtgttgagagggtaggataataatgtgttcctcatttgatctaatggt 788083  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 26492071 - 26492030
Alignment:
Q  262 atggtgcacaagttttacacttgtgcatcctaaatgtcacca 303  Q
    ||||||||||||||| ||||||||||| |||||||| |||||    
T  26492071 atggtgcacaagtttaacacttgtgcaccctaaatgccacca 26492030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 22255 - 22201
Alignment:
Q  189 aaaaatctagtggtgagagtgtatgataagagtgtgtttctcatttcatccaatg 243  Q
    ||||||||| || |||| | ||||||||||||||||||| |||||| ||||||||    
T  22255 aaaaatctaatgttgagggagtatgataagagtgtgtttttcatttaatccaatg 22201  T

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