View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_low_30 (Length: 273)
Name: NF19742_low_30
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 43095213 - 43095453
Alignment:
| Q |
18 |
acaatcagttcagcggcaagcggctactactttacaatgcatgcaaactctttcgcgattgcagtctcaagttagtgcgaggaaaatcagaatgtctgag |
117 |
Q |
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| T |
43095213 |
acaatctgttcagcggcaagcggctactactttacaatgcatgcaaactctttcgcgattgcaatctcaagttagtgcgaggaaaatcagaatgtctgag |
43095312 |
T |
|
| Q |
118 |
gagaatcaatcttttcaacgccaattgcagcagaaacgcgaaaaggaacttgacaagttacaagctgttgtaagtatttgttcaatattaatttattttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43095313 |
gagaatcaatcttttcaacgccaattgcagcagaaacgtgaaaaggaacttgacaagttacaagctgctgtaagtatttgttcaatattaatttattttt |
43095412 |
T |
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| Q |
218 |
atgattatgcttagtgttttgtttttataaatgcgtttaat |
258 |
Q |
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| T |
43095413 |
atgattatgcttagtgttttgtttttataaatgcgtttaat |
43095453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 6095088 - 6094860
Alignment:
| Q |
18 |
acaatcagttcagcggcaagcggctactactttacaatgcatgcaaactctttcgcgattgcagtctcaagttagtgcgaggaaaatcagaatgtctgag |
117 |
Q |
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|||||| ||||| || ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||||||||||| |
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| T |
6095088 |
acaatctgttcaacgacaagcagctactactttacaatgcatgcaaactctttcacggttgcagtctcaagttagtgcgaggaagataagaatgtctgaa |
6094989 |
T |
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| Q |
118 |
gagaatcaatcttttcaacgccaattgcagcagaaacgcgaaaaggaacttgacaagttacaagctgttgtaagtatttgttcaatattaatttattttt |
217 |
Q |
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| T |
6094988 |
gagaatcaatcttttcaacgccaattgcagcagaaacgtgaaaatgaacttgacaagttacaagctgctgtaagtatttgttcaatattaatttattttt |
6094889 |
T |
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| Q |
218 |
atgattatgcttagtgttttgtttttata |
246 |
Q |
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||||||||| ||| ||| ||||||||||| |
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| T |
6094888 |
atgattatggttaatgtgttgtttttata |
6094860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 44162744 - 44162594
Alignment:
| Q |
96 |
gaggaaaatcagaatgtctgaggagaatcaatcttttcaacgccaattgcagcagaaacgcgaaaaggaacttgacaagttacaagctgttgtaagtatt |
195 |
Q |
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|||||| || ||||||||||| |||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| |
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| T |
44162744 |
gaggaagataagaatgtctgaagagaatgaatcttttcaacgccaattgcagcagaatcgtgaaaaggaacttgacaagttacaagctgctgtaagtatt |
44162645 |
T |
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| Q |
196 |
tgttcaatattaatttatttttatgattatgcttagtgttttgtttttata |
246 |
Q |
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||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |
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| T |
44162644 |
tgttcaatattaatttatttttatgattatggttaatgtgttgtttttata |
44162594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 44188864 - 44188714
Alignment:
| Q |
96 |
gaggaaaatcagaatgtctgaggagaatcaatcttttcaacgccaattgcagcagaaacgcgaaaaggaacttgacaagttacaagctgttgtaagtatt |
195 |
Q |
| |
|
|||||| || ||||||||||| |||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| |
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| T |
44188864 |
gaggaagataagaatgtctgaagagaatgaatcttttcaacgccaattgcagcagaatcgtgaaaaggaacttgacaagttacaagctgctgtaagtatt |
44188765 |
T |
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| Q |
196 |
tgttcaatattaatttatttttatgattatgcttagtgttttgtttttata |
246 |
Q |
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||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |
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| T |
44188764 |
tgttcaatattaatttatttttatgattatggttaatgtgttgtttttata |
44188714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 44188907 - 44188866
Alignment:
| Q |
25 |
gttcagcggcaagcggctactactttacaatgcatgcaaact |
66 |
Q |
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||||| || |||||||||||||||| |||||||||||||||| |
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| T |
44188907 |
gttcaacgacaagcggctactacttcacaatgcatgcaaact |
44188866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 32727992 - 32727842
Alignment:
| Q |
96 |
gaggaaaatcagaatgtctgaggagaatcaatcttttcaacgccaattgcagcagaaacgcgaaaaggaacttgacaagttacaagctgttgtaagtatt |
195 |
Q |
| |
|
|||||| || ||||||||||| |||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| |
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| T |
32727992 |
gaggaagataagaatgtctgaagagaatgaatcttttcaacgccaattgcagcagaatcgtgaaaaggaacttgacaagttacaagctgctgtaagtatt |
32727893 |
T |
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| Q |
196 |
tgttcaatattaatttatttttatgattatgcttagtgttttgtttttata |
246 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| ||| ||||||||||| |
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| T |
32727892 |
tgttcaatattaatttatttttatgattgtggttaatgtgttgtttttata |
32727842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 32719008 - 32718858
Alignment:
| Q |
96 |
gaggaaaatcagaatgtctgaggagaatcaatcttttcaacgccaattgcagcagaaacgcgaaaaggaacttgacaagttacaagctgttgtaagtatt |
195 |
Q |
| |
|
|||||| || ||||||||||| |||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| |
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| T |
32719008 |
gaggaagataagaatgtctgaagagaatgaatcttttcaacgccaattgcagcagaatcgtgaaaaggaacttgacaagttacaagctgctgtaagtatt |
32718909 |
T |
|
| Q |
196 |
tgttcaatattaatttatttttatgattatgcttagtgttttgtttttata |
246 |
Q |
| |
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| |||||||||||||||||||||||||| || ||| ||| ||||||||||| |
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| T |
32718908 |
tattcaatattaatttatttttatgattgtggttaatgtgttgtttttata |
32718858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 32719051 - 32719010
Alignment:
| Q |
25 |
gttcagcggcaagcggctactactttacaatgcatgcaaact |
66 |
Q |
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||||| || |||||||||||||||| |||||||||||||||| |
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| T |
32719051 |
gttcaacgacaagcggctactacttcacaatgcatgcaaact |
32719010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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