View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19742_low_31 (Length: 268)

Name: NF19742_low_31
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19742_low_31
NF19742_low_31
[»] chr5 (17 HSPs)
chr5 (1-268)||(7840485-7840751)
chr5 (168-260)||(31683433-31683527)
chr5 (164-268)||(14532536-14532642)
chr5 (189-268)||(13309914-13309995)
chr5 (176-265)||(19844256-19844345)
chr5 (161-251)||(29463044-29463136)
chr5 (192-268)||(26686913-26686989)
chr5 (192-268)||(26956644-26956720)
chr5 (5-62)||(43222189-43222245)
chr5 (189-268)||(1079911-1079992)
chr5 (5-59)||(9465806-9465859)
chr5 (159-253)||(13461811-13461907)
chr5 (216-265)||(14321942-14321991)
chr5 (176-268)||(24405901-24405994)
chr5 (239-268)||(35567532-35567561)
chr5 (5-61)||(14733617-14733672)
chr5 (224-268)||(33598994-33599038)
[»] chr3 (20 HSPs)
chr3 (161-265)||(10811170-10811276)
chr3 (161-265)||(9753253-9753359)
chr3 (185-265)||(3648614-3648694)
chr3 (182-265)||(44413873-44413957)
chr3 (189-268)||(28920008-28920089)
chr3 (161-264)||(48346862-48346967)
chr3 (181-268)||(50122002-50122091)
chr3 (189-268)||(26772400-26772481)
chr3 (161-267)||(27089903-27090009)
chr3 (171-245)||(22237201-22237277)
chr3 (171-253)||(53870973-53871057)
chr3 (5-61)||(36011001-36011056)
chr3 (237-268)||(9692757-9692788)
chr3 (161-253)||(13778479-13778573)
chr3 (161-265)||(28700495-28700601)
chr3 (160-268)||(33939267-33939380)
chr3 (189-256)||(39490051-39490117)
chr3 (189-268)||(8847141-8847222)
chr3 (5-62)||(43624332-43624388)
chr3 (216-265)||(44463391-44463440)
[»] chr4 (22 HSPs)
chr4 (161-265)||(37060352-37060456)
chr4 (161-265)||(56557768-56557872)
chr4 (161-256)||(18518382-18518479)
chr4 (190-265)||(40590635-40590710)
chr4 (182-268)||(27051037-27051126)
chr4 (196-268)||(44539767-44539839)
chr4 (174-265)||(6520777-6520868)
chr4 (196-265)||(26492043-26492112)
chr4 (188-253)||(52430924-52430991)
chr4 (189-268)||(56474726-56474803)
chr4 (225-268)||(336804-336847)
chr4 (237-268)||(2738276-2738307)
chr4 (206-265)||(6239414-6239473)
chr4 (190-265)||(2268467-2268544)
chr4 (189-264)||(5249904-5249981)
chr4 (214-256)||(5466481-5466523)
chr4 (224-266)||(11546896-11546938)
chr4 (190-268)||(29175258-29175336)
chr4 (189-265)||(39478469-39478549)
chr4 (188-265)||(24045279-24045356)
chr4 (226-263)||(32696218-32696255)
chr4 (160-256)||(10474041-10474140)
[»] chr2 (16 HSPs)
chr2 (161-265)||(38821401-38821505)
chr2 (164-265)||(4228869-4228975)
chr2 (162-264)||(2144755-2144859)
chr2 (169-249)||(16049224-16049304)
chr2 (216-268)||(16799704-16799756)
chr2 (162-265)||(31548345-31548448)
chr2 (182-268)||(33273538-33273625)
chr2 (189-256)||(28494903-28494972)
chr2 (190-268)||(5427182-5427262)
chr2 (196-265)||(6336287-6336356)
chr2 (224-265)||(33616500-33616541)
chr2 (191-268)||(1907724-1907803)
chr2 (237-265)||(9377491-9377519)
chr2 (192-265)||(13438789-13438864)
chr2 (176-268)||(21738563-21738655)
chr2 (181-265)||(39147800-39147887)
[»] chr8 (14 HSPs)
chr8 (161-265)||(39211076-39211182)
chr8 (189-265)||(6511820-6511896)
chr8 (168-264)||(12284207-12284305)
chr8 (161-253)||(33605012-33605102)
chr8 (176-265)||(33100416-33100505)
chr8 (189-265)||(12734970-12735048)
chr8 (161-209)||(4312641-4312689)
chr8 (176-268)||(27854714-27854805)
chr8 (189-265)||(7598743-7598821)
chr8 (193-268)||(34639564-34639641)
chr8 (199-265)||(36786807-36786877)
chr8 (205-265)||(3381702-3381762)
chr8 (216-256)||(11114657-11114697)
chr8 (204-268)||(32133359-32133423)
[»] chr1 (17 HSPs)
chr1 (169-253)||(37139863-37139947)
chr1 (161-229)||(47990260-47990328)
chr1 (176-265)||(44517907-44517998)
chr1 (169-220)||(611574-611625)
chr1 (197-265)||(3558881-3558949)
chr1 (196-268)||(40861228-40861300)
chr1 (189-265)||(9566919-9566997)
chr1 (181-268)||(31826982-31827072)
chr1 (192-268)||(50775118-50775196)
chr1 (191-265)||(44906493-44906567)
chr1 (190-256)||(14983816-14983884)
chr1 (192-268)||(1689423-1689499)
chr1 (193-265)||(8350161-8350233)
chr1 (189-258)||(25509138-25509209)
chr1 (196-268)||(30536023-30536095)
chr1 (193-265)||(37685365-37685437)
chr1 (193-265)||(37700081-37700153)
[»] chr7 (16 HSPs)
chr7 (168-254)||(41650753-41650839)
chr7 (5-59)||(27386897-27386950)
chr7 (190-265)||(49069284-49069361)
chr7 (189-265)||(3937082-3937158)
chr7 (167-268)||(24532879-24532982)
chr7 (164-265)||(31674989-31675092)
chr7 (189-265)||(38259098-38259174)
chr7 (176-268)||(42552931-42553023)
chr7 (182-265)||(17002371-17002457)
chr7 (224-265)||(47448861-47448902)
chr7 (193-265)||(22605394-22605466)
chr7 (9-61)||(31322032-31322083)
chr7 (182-265)||(33578267-33578351)
chr7 (5-61)||(37134384-37134439)
chr7 (192-265)||(38340344-38340419)
chr7 (159-265)||(41399091-41399199)
[»] chr6 (8 HSPs)
chr6 (176-268)||(13423000-13423094)
chr6 (191-268)||(2241986-2242061)
chr6 (189-268)||(5694110-5694191)
chr6 (190-265)||(34047421-34047498)
chr6 (191-265)||(17551339-17551415)
chr6 (169-206)||(34850732-34850769)
chr6 (196-268)||(5522605-5522677)
chr6 (174-214)||(33195263-33195303)
[»] scaffold0343 (1 HSPs)
scaffold0343 (161-203)||(8938-8980)
[»] scaffold0003 (1 HSPs)
scaffold0003 (225-265)||(366328-366368)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 7840485 - 7840751
Alignment:
Q  1 tgtctctctttcataataacaatctccatttatattttataaatgtagaggatttcaactcgcacattaaattacaaaatcgtgtaacatattgaacgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||    
T  7840485 tgtctctctttcataataacaatctccatttatattttataaatgaagaggatctcaacttgcacattaaattacaaaatcgtataacatattgaacgta 7840584  T
Q  101 tcagtcttgtgaccgtggtcacaaatttagatgaatgttatttgaatagctatttttgttgacaacctaaatattcaaagaaaaatgagtattgacacaa 200  Q
    |||  ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  7840585 tcaaccttgtgatcgtggtcacaaatttagatgaatgttatttgaatagttatttttgttgacaacctaaatatacaaagaaaaatgagta-tgacacaa 7840683  T
Q  201 aaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    ||| |||||||||| ||||||||||||||||||||  || ||| ||||| ||||||||||||||||||    
T  7840684 aaatcaaaataatagagagaagataaaaacacaatccgagtataagagataaagttatcacaaaaatt 7840751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 31683433 - 31683527
Alignment:
Q  168 taaatattcaaagaaaaatgagtattgacacaaaaaccaaaataat--atagagaagataaaaacacaatttgaatatgagagagaaagttatca 260  Q
    ||||||| |||||||| ||||||||||||||||||||||||| |||  | ||||||  |||||||| ||| ||||||||||||||||||||||||    
T  31683433 taaatatacaaagaaatatgagtattgacacaaaaaccaaaacaataaaaagagaaagtaaaaacataatatgaatatgagagagaaagttatca 31683527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 14532642 - 14532536
Alignment:
Q  164 aacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatataga--gaagataaaaacacaatttgaatatgagagagaaagttatcac 261  Q
    ||||||||||| |||||||| |||| ||||||||||| |||||||  |||| |||  |||  |||||||| ||| ||| |||||||||||||||| ||||    
T  14532642 aacctaaatatacaaagaaatatgaatattgacacaagaaccaaagcaatagagaaagaaagtaaaaacaaaatgtgagtatgagagagaaagttgtcac 14532543  T
Q  262 aaaaatt 268  Q
    |||||||    
T  14532542 aaaaatt 14532536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 13309995 - 13309914
Alignment:
Q  189 gtattgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    ||||| |||||||||||||| || || |||||  |  |||||||| ||| ||||||||||||||||||||||||||||||||    
T  13309995 gtattaacacaaaaaccaaagtagtagagagagaaagtaaaaacataatgtgaatatgagagagaaagttatcacaaaaatt 13309914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 19844256 - 19844345
Alignment:
Q  176 caaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||||   |||||| |||| ||||||||  |||| ||||||  |||||||| ||| || ||||||||||||||||||||||||||    
T  19844256 caaagaaaaagaggtattggcacacaaaccaaagcaatagagagaaagtaaaaacataatgtggatatgagagagaaagttatcacaaaa 19844345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 29463136 - 29463044
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataat--atagagaagataaaaacacaatttgaatatgagagaga 251  Q
    |||||||||||||| |||||||| |||||||||| |||||||| ||||  |||  | |||||| ||||||||| ||| ||| |||||||||||    
T  29463136 gacaacctaaatatacaaagaaatatgagtattggcacaaaaatcaaagcaatagagagagaaaataaaaacaaaatgtgagtatgagagaga 29463044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 26686989 - 26686913
Alignment:
Q  192 ttgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||| ||||||| ||||| |||| ||||||  |||||| | ||| |||||||||||||||||||| |||||||||||    
T  26686989 ttgatacaaaaatcaaaacaatagagagaaagtaaaaatataatgtgaatatgagagagaaagttgtcacaaaaatt 26686913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 26956720 - 26956644
Alignment:
Q  192 ttgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||| ||||||| ||||| |||| ||||||  |||||| | ||| |||||||||||||||||||| |||||||||||    
T  26956720 ttgatacaaaaatcaaaacaatagagagaaagtaaaaatataatgtgaatatgagagagaaagttgtcacaaaaatt 26956644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 43222189 - 43222245
Alignment:
Q  5 tctctttcataataacaatctccatttatattttataaatgtagaggatttcaactcg 62  Q
    ||||||||||||| ||||||||||||||| ||||||||||| |||| || ||||||||    
T  43222189 tctctttcataatgacaatctccatttat-ttttataaatggagagtatctcaactcg 43222245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 1079911 - 1079992
Alignment:
Q  189 gtattgacacaaaaaccaaaataatataga--gaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||| ||||||| |||||  ||||||||  |||  |||||| | ||| |||||||||||||||||||| |||||||||||    
T  1079911 gtattggcacaaaatccaaagcaatatagaaagaaagtaaaaagataatgtgaatatgagagagaaagttgtcacaaaaatt 1079992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 9465806 - 9465859
Alignment:
Q  5 tctctttcataataacaatctccatttatattttataaatgtagaggatttcaac 59  Q
    |||||||||||||  |||||||||||||| ||||||||||| ||||||| |||||    
T  9465806 tctctttcataatggcaatctccatttat-ttttataaatgaagaggatctcaac 9465859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 253
Target Start/End: Complemental strand, 13461907 - 13461811
Alignment:
Q  159 ttgacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaa--ataatatagagaagataaaaacacaatttgaatatgagagagaaa 253  Q
    ||||||||| ||||||  |||||||| |  |||||| |||||| | ||||  | |||| |||||| ||||||||||||| ||| |||||||||||||    
T  13461907 ttgacaaccaaaatatagaaagaaaagtaggtattgtcacaaatatcaaagcaaaatagagagaaaataaaaacacaatgtgattatgagagagaaa 13461811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 14321942 - 14321991
Alignment:
Q  216 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||| ||||| | ||||| |||||||||||||||||||| ||||||||    
T  14321942 agagaaaataaatatacaatatgaatatgagagagaaagttgtcacaaaa 14321991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 24405901 - 24405994
Alignment:
Q  176 caaagaaaaatgagtattgacacaaaaaccaaaataatata-gagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||||||  ||||||| ||  ||||||||| |||| | |||||  |||||||| ||| | | ||| ||||||||||||||||||||||||    
T  24405901 caaagaaaaatatgtattgataccgaaaccaaaacaatagaagagaaagtaaaaacataatgttagtataagagagaaagttatcacaaaaatt 24405994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 35567561 - 35567532
Alignment:
Q  239 aatatgagagagaaagttatcacaaaaatt 268  Q
    ||||||||||||||||||||||||||||||    
T  35567561 aatatgagagagaaagttatcacaaaaatt 35567532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 14733617 - 14733672
Alignment:
Q  5 tctctttcataataacaatctccatttatattttataaatgtagaggatttcaactc 61  Q
    |||||||| |||| ||||||| ||||||| ||||||||||| ||||||| |||||||    
T  14733617 tctctttcctaatgacaatcttcatttat-ttttataaatggagaggatctcaactc 14733672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 33599038 - 33598994
Alignment:
Q  224 taaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||| ||| ||| ||||||| ||||||||||||||||||||    
T  33599038 taaaaacataatgtgagtatgagaaagaaagttatcacaaaaatt 33598994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 10811276 - 10811170
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataat--atagagaagataaaaacacaatttgaatatgagagagaaagttat 258  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||  |||  | ||||||| |||||||||||| ||| |||||||||||||||| |    
T  10811276 gacaacctaaatatacaaagaaatatgagtattgacacaaataccaaagcaatagagagagaaggtaaaaacacaatgtgagtatgagagagaaagttgt 10811177  T
Q  259 cacaaaa 265  Q
    |||||||    
T  10811176 cacaaaa 10811170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 9753359 - 9753253
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataat--atagagaagataaaaacacaatttgaatatgagagagaaagttat 258  Q
    |||||||||||||| |||||| | |||||| |||||||||||||||||| |||  |||||||| ||||||||||||| ||| ||||||||| ||| || |    
T  9753359 gacaacctaaatatacaaagatatatgagtgttgacacaaaaaccaaaacaatagatagagaaaataaaaacacaatgtgagtatgagagataaaattgt 9753260  T
Q  259 cacaaaa 265  Q
    |||||||    
T  9753259 cacaaaa 9753253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 265
Target Start/End: Complemental strand, 3648694 - 3648614
Alignment:
Q  185 atgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||||||||||||| ||||| |||| ||| ||  |||||| ||||| ||||||||||||||||| || ||||||||    
T  3648694 atgagtattgacacaaaaatcaaaacaatagagataaagtaaaaatacaatgtgaatatgagagagaaaattgtcacaaaa 3648614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 44413873 - 44413957
Alignment:
Q  182 aaaatgag-tattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||||| |||||||||||||||||||  |||| ||||||| |||||| | ||| ||| |||||||||||||||| ||||||||    
T  44413873 aaaatgagatattgacacaaaaaccaaagcaatagagagaaggtaaaaagataatgtgagtatgagagagaaagttgtcacaaaa 44413957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 28920008 - 28920089
Alignment:
Q  189 gtattgacacaaaaaccaaaataatatagaga--agataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    ||||||| |||||||||||||||||| |||||  | ||||||||  ||| ||| |||||||||||||||| |||||||||||    
T  28920008 gtattgatacaaaaaccaaaataatagagagagaaaataaaaacttaatatgagtatgagagagaaagttgtcacaaaaatt 28920089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 48346967 - 48346862
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataat--atagagaagataaaaacacaatttgaatatgagagagaaagttat 258  Q
    |||||||||||||| |||||||| |||| |||||||||||||||||||  |||  | ||||||  |||||||| ||| | | ||||| |||||||||| |    
T  48346967 gacaacctaaatatacaaagaaatatgaatattgacacaaaaaccaaagcaatagagagagaaagtaaaaacaaaatataagtatgaaagagaaagttgt 48346868  T
Q  259 cacaaa 264  Q
    ||||||    
T  48346867 cacaaa 48346862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 50122002 - 50122091
Alignment:
Q  181 aaaaatgagtattgacacaaaaaccaaaataatatag--agaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    ||||||||| ||||| |||||||||||| ||||| ||  |||| |||||||||||   |||||||||||||||||||  |||||||||||    
T  50122002 aaaaatgagaattgatacaaaaaccaaagtaatacagggagaaaataaaaacacagcctgaatatgagagagaaagtcgtcacaaaaatt 50122091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 26772481 - 26772400
Alignment:
Q  189 gtattgacacaaaaaccaaaataatatagaga--agataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||||| |||| |||||||||| |||||  | |||||||   ||| |||||||||||||||||||| |||||||||||    
T  26772481 gtattgacacgaaaatcaaaataatagagagagaaaataaaaatgtaatgtgaatatgagagagaaagttgtcacaaaaatt 26772400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 267
Target Start/End: Original strand, 27089903 - 27090009
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatca 260  Q
    ||||| |||||||| |||||||| ||||||||||| ||||||||||||  |||| ||| ||  |||||||| ||| | ||||| | ||| ||| || |||    
T  27089903 gacaatctaaatatacaaagaaatatgagtattgatacaaaaaccaaagcaatagagaaaaagtaaaaacaaaatgtaaatataaaagataaaattgtca 27090002  T
Q  261 caaaaat 267  Q
    |||||||    
T  27090003 caaaaat 27090009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 22237277 - 22237201
Alignment:
Q  171 atattcaaagaaaaatgagtattgacacaaaaaccaaaataat--atagagaagataaaaacacaatttgaatatga 245  Q
    |||| |||||||||||  |||||||||||||||| ||||||||  | ||||||  |||||||||||| |||||||||    
T  22237277 atatacaaagaaaaattcgtattgacacaaaaactaaaataatagagagagaaagtaaaaacacaatgtgaatatga 22237201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 53870973 - 53871057
Alignment:
Q  171 atattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagaga--agataaaaacacaatttgaatatgagagagaaa 253  Q
    |||| |||||||| |||||||||| |||||| ||||||  |||| |||||  || |||||||| ||| |||||||||||||||||    
T  53870973 atatacaaagaaatatgagtattggcacaaataccaaagcaatagagagagaaggtaaaaacaaaatgtgaatatgagagagaaa 53871057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 36011001 - 36011056
Alignment:
Q  5 tctctttcataataacaatctccatttatattttataaatgtagaggatttcaactc 61  Q
    ||||||||||||| ||||||||||||||| ||||||||||  ||||||| |||||||    
T  36011001 tctctttcataattacaatctccatttat-ttttataaattgagaggatctcaactc 36011056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 268
Target Start/End: Complemental strand, 9692788 - 9692757
Alignment:
Q  237 tgaatatgagagagaaagttatcacaaaaatt 268  Q
    ||||||||||||||||||||||||||||||||    
T  9692788 tgaatatgagagagaaagttatcacaaaaatt 9692757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 13778573 - 13778479
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataata--tagagaagataaaaacacaatttgaatatgagagagaaa 253  Q
    ||||| |||||||| |||||||| ||||||||||||| ||| ||||||| ||||   ||||||  ||||||| |||| ||| ||||||| |||||    
T  13778573 gacaatctaaatatacaaagaaatatgagtattgacataaagaccaaaacaatagcgagagaaagtaaaaactcaatgtgagtatgagaaagaaa 13778479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 28700601 - 28700495
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataat--atagagaagataaaaacacaatttgaatatgagagagaaagttat 258  Q
    |||||| ||| ||| |||||||| |||||||||| |||||||||||||  |||  | ||||||  |||||||| ||| ||| ||||||||| |||||| |    
T  28700601 gacaacttaagtatacaaagaaagatgagtattggcacaaaaaccaaagcaatagagagagaaagtaaaaacataatgtgagtatgagagataaagttgt 28700502  T
Q  259 cacaaaa 265  Q
    || ||||    
T  28700501 caaaaaa 28700495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 268
Target Start/End: Complemental strand, 33939380 - 33939267
Alignment:
Q  160 tgacaacctaaat-attcaaagaaaaatgagtattgacacaaaaaccaaaataatatagaga-aga---taaaaacacaatttgaatatgagagagaaag 254  Q
    |||||||| |||| |||||||| |||   |||| ||||||||||||||||  |||| ||||| |||   |||||| | ||| ||||||||||||||||||    
T  33939380 tgacaaccaaaattattcaaaggaaatgaagtagtgacacaaaaaccaaagcaatagagagagagaaagtaaaaagataatgtgaatatgagagagaaag 33939281  T
Q  255 ttatcacaaaaatt 268  Q
    || |||||||||||    
T  33939280 ttgtcacaaaaatt 33939267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 39490051 - 39490117
Alignment:
Q  189 gtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagtt 256  Q
    ||||||| | ||||||||||| |||| |||||| ||||||||| ||| ||||||||||||| ||||||    
T  39490051 gtattgatataaaaaccaaaaaaatagagagaaaataaaaaca-aatgtgaatatgagagataaagtt 39490117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 8847222 - 8847141
Alignment:
Q  189 gtattgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||| |||||||||||||| |||| | |||| |  |||||| | ||| ||| |||||||||||||||||| |||||||||    
T  8847222 gtattggcacaaaaaccaaaacaatagaaagaaaaagtaaaaaaataatgtgagtatgagagagaaagttatgacaaaaatt 8847141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 43624388 - 43624332
Alignment:
Q  5 tctctttcataataacaatctccatttatattttataaatgtagaggatttcaactcg 62  Q
    ||||||| ||||| ||||||||||||||| ||||||||||  ||||||| ||||||||    
T  43624388 tctcttttataatgacaatctccatttat-ttttataaatagagaggatctcaactcg 43624332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 44463440 - 44463391
Alignment:
Q  216 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||| ||||||| | ||| ||| |||||||||||||||||||||||||    
T  44463440 agagaaaataaaaatataatgtgagtatgagagagaaagttatcacaaaa 44463391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 37060456 - 37060352
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatca 260  Q
    |||||||||||| | ||||||||||||| |||||||| || |||||||  |||| ||||||| |||||| | ||| |||||||||||||||||||| |||    
T  37060456 gacaacctaaatttacaaagaaaaatgaatattgacataagaaccaaagcaatagagagaaggtaaaaatataatgtgaatatgagagagaaagttgtca 37060357  T
Q  261 caaaa 265  Q
    |||||    
T  37060356 caaaa 37060352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 56557872 - 56557768
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatca 260  Q
    ||||||||||||||  ||||||| |||||||||| |||||| ||||||  |||| ||||||| |||||||||||| ||| ||||||||||||| || |||    
T  56557872 gacaacctaaatatagaaagaaatatgagtattggcacaaataccaaagcaatagagagaaggtaaaaacacaatgtgagtatgagagagaaaattgtca 56557773  T
Q  261 caaaa 265  Q
    |||||    
T  56557772 caaaa 56557768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 18518382 - 18518479
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataat--atagagaagataaaaacacaatttgaatatgagagagaaagtt 256  Q
    |||||||||||||| |||||||| |||||||| || ||||| ||||||| |||  | |||||| ||||||| ||||| ||||||||||||||||||||    
T  18518382 gacaacctaaatatacaaagaaacatgagtatcgatacaaacaccaaaacaatagaaagagaaaataaaaatacaatgtgaatatgagagagaaagtt 18518479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 40590710 - 40590635
Alignment:
Q  190 tattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||| ||| |||||||||||||| ||| |||||||||||| ||| ||||||||||| |||||||| ||||||||    
T  40590710 tattgatacagaaaccaaaataatagagaaaagataaaaacataatatgaatatgagacagaaagttgtcacaaaa 40590635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 27051037 - 27051126
Alignment:
Q  182 aaaatgag-tattgacacaaaaaccaaaataatatagaga--agataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||| |||||||||||||||||||| |||| |||||  || |||||| | ||| ||| ||||||||||||||||||||||||||||    
T  27051037 aaaatgagatattgacacaaaaaccaaaacaataaagagagaaggtaaaaagataatgtgagtatgagagagaaagttatcacaaaaatt 27051126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 44539839 - 44539767
Alignment:
Q  196 cacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||||||||  |||| |||||| ||||||| | ||| | | ||||||||||||||||||||||||||||    
T  44539839 cacaaaaaccaaagcaatagagagaaaataaaaagataatataagtatgagagagaaagttatcacaaaaatt 44539767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 6520777 - 6520868
Alignment:
Q  174 ttcaaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||||||||||  || ||||||  |||||||||| |||| ||||||  |||||||| ||| ||| |||||||||||||||| | ||||||    
T  6520777 ttcaaagaaaaataggtgttgacatgaaaaccaaaacaatagagagaaagtaaaaacataatgtgagtatgagagagaaagttgttacaaaa 6520868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 26492112 - 26492043
Alignment:
Q  196 cacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||||||||||  |||| |||||||||||||| | ||| ||||||||||||| ||||||  |||||||    
T  26492112 cacaaaaaccaaagcaatagagagaagataaaaagataatctgaatatgagagataaagttgccacaaaa 26492043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 52430991 - 52430924
Alignment:
Q  188 agtattgacacaaaaaccaaaataatatagag--aagataaaaacacaatttgaatatgagagagaaa 253  Q
    ||||||||||||||||||||||||||| ||||  ||| |||||||| ||| ||| || ||||||||||    
T  52430991 agtattgacacaaaaaccaaaataatagagagacaaggtaaaaacataatatgagtacgagagagaaa 52430924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 56474726 - 56474803
Alignment:
Q  189 gtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    ||||||||||||||||||||| |||| |||||   |||||||| ||| ||| ||| ||||||||| || |||||||||||    
T  56474726 gtattgacacaaaaaccaaaacaatagagaga--gtaaaaacataatgtgagtataagagagaaaattgtcacaaaaatt 56474803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 336804 - 336847
Alignment:
Q  225 aaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||    
T  336804 aaaaatacaatgtgaatatgagagagaaagttgtcacaaaaatt 336847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 268
Target Start/End: Original strand, 2738276 - 2738307
Alignment:
Q  237 tgaatatgagagagaaagttatcacaaaaatt 268  Q
    ||||||||||||||||||||||||||||||||    
T  2738276 tgaatatgagagagaaagttatcacaaaaatt 2738307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 6239473 - 6239414
Alignment:
Q  206 aaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||| |||||| |||||||||  || |||||||||||||||||||| ||| ||||    
T  6239473 aaaataatagagagaaaataaaaacatgatgtgaatatgagagagaaagttgtcaaaaaa 6239414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 2268467 - 2268544
Alignment:
Q  190 tattgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||||||||||||||||| |||| | |||| |  |||||| | ||| ||| |||||||||||||||| ||||||||    
T  2268467 tattgacacaaaaaccaaaacaatagaaagaaaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaa 2268544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 5249981 - 5249904
Alignment:
Q  189 gtattgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagttatcacaaa 264  Q
    |||||||||| |||||||||| |||| |||||  |  |||||||| ||| ||| |||||||||||||||| |||||||    
T  5249981 gtattgacacgaaaaccaaaacaatagagagagaaagtaaaaacataatgtgagtatgagagagaaagttgtcacaaa 5249904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 5466481 - 5466523
Alignment:
Q  214 atagagaagataaaaacacaatttgaatatgagagagaaagtt 256  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||    
T  5466481 atagagaaaataaaaacataatgtgaatatgagagagaaagtt 5466523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 11546896 - 11546938
Alignment:
Q  224 taaaaacacaatttgaatatgagagagaaagttatcacaaaaa 266  Q
    |||||| | ||| ||||||||||||||||||||||||||||||    
T  11546896 taaaaatataatatgaatatgagagagaaagttatcacaaaaa 11546938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 29175336 - 29175258
Alignment:
Q  190 tattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||||||||||||||  || | ||||||  |||||| | ||| ||| ||||||||| |||||| |||||||||||    
T  29175336 tattgacacaaaaaccaaagcaagagagagaaagtaaaaagataatgtgagtatgagagaaaaagttgtcacaaaaatt 29175258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 39478549 - 39478469
Alignment:
Q  189 gtattgacacaaaaaccaaaataatatagagaa-ga---taaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||||||||| |||| |||||||||||| ||   |||||| | ||| ||| |||||||||||||||| ||||||||    
T  39478549 gtattgacacaaaaatcaaagtaatatagagaaagaaagtaaaaaaataatatgagtatgagagagaaagttgtcacaaaa 39478469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 24045356 - 24045279
Alignment:
Q  188 agtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||||||||||||| ||||  |||| ||||||  |||||||| ||| ||| |||||||||||| ||| || |||||    
T  24045356 agtattgacacaaaaatcaaagcaatagagagaaagtaaaaacataatgtgagtatgagagagaaggttgtcgcaaaa 24045279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 32696255 - 32696218
Alignment:
Q  226 aaaacacaatttgaatatgagagagaaagttatcacaa 263  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  32696255 aaaaaacaatgtgaatatgagagagaaagttatcacaa 32696218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 256
Target Start/End: Original strand, 10474041 - 10474140
Alignment:
Q  160 tgacaacc-taaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagtt 256  Q
    |||||||| ||||| | ||||||||||  |||||||||||||||| |||| ||||| |||||| |  |||||| | ||  |||||| |||||||||||||    
T  10474041 tgacaaccataaatttacaaagaaaaagaagtattgacacaaaaatcaaagtaatagagagaaaaagtaaaaatataaaatgaatacgagagagaaagtt 10474140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 38821505 - 38821401
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatca 260  Q
    |||||||||||||| |||||||| |||||||||| |||||| ||||||  |||| ||||||| |||||||||||| ||| ||||||| ||||| || |||    
T  38821505 gacaacctaaatatacaaagaaatatgagtattggcacaaataccaaagcaatagagagaaggtaaaaacacaatgtgagtatgagaaagaaaattgtca 38821406  T
Q  261 caaaa 265  Q
    |||||    
T  38821405 caaaa 38821401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 4228869 - 4228975
Alignment:
Q  164 aacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataata-tagaga-aga---taaaaacacaatttgaatatgagagagaaagttat 258  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||| ||||| |||||| |||   |||||||||||| |||||| |||||| ||||||||    
T  4228869 aacctaaatatacaaagaaatatgagtattgacacaaaaactaaagtaatagtagagagagaaactaaaaacacaatgtgaatacgagagaaaaagttat 4228968  T
Q  259 cacaaaa 265  Q
    |||||||    
T  4228969 cacaaaa 4228975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 2144859 - 2144755
Alignment:
Q  162 acaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagag--aagataaaaacacaatttgaatatgagagagaaagttatc 259  Q
    |||| |||||||| |||||||| |||||||||| |||||||||||||  |||| ||||  ||  |||||||| ||| ||| |||| ||||||||||||||    
T  2144859 acaatctaaatatacaaagaaatatgagtattggcacaaaaaccaaagcaatagagagataaattaaaaacaaaatgtgagtatgggagagaaagttatc 2144760  T
Q  260 acaaa 264  Q
    |||||    
T  2144759 acaaa 2144755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 16049224 - 16049304
Alignment:
Q  169 aaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagaga 249  Q
    |||||| ||||||||| |   |||||| || ||||| ||||||||| |||||| || |||||||||| |||||||||||||    
T  16049224 aaatatacaaagaaaagtagatattgatacgaaaactaaaataatagagagaaaatgaaaacacaatgtgaatatgagaga 16049304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 16799756 - 16799704
Alignment:
Q  216 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||| ||||||| | ||| ||| ||||||||||||||||||||||||||||    
T  16799756 agagaaaataaaaatataatatgagtatgagagagaaagttatcacaaaaatt 16799704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 265
Target Start/End: Complemental strand, 31548448 - 31548345
Alignment:
Q  162 acaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataat--atagagaagataaaaacacaatttgaatatgagagagaaagttatc 259  Q
    ||||||||||||| |||||||| ||||||||||| |||||| |||||  |||  | ||||||  |||||||| ||| | |||||  ||||||||||| ||    
T  31548448 acaacctaaatatacaaagaaatatgagtattgatacaaaatccaaagcaatagagagagaaagtaaaaacataatataaatat--gagagaaagttgtc 31548351  T
Q  260 acaaaa 265  Q
    ||||||    
T  31548350 acaaaa 31548345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 33273538 - 33273625
Alignment:
Q  182 aaaatgag-tattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||| ||||||||||||||| ||||||||| |||||  || |||||| ||| | ||||| ||||||||| || | |||||||||    
T  33273538 aaaatgagatattgacacaaaaactaaaataataaagagataatgaaaacataatgtaaatataagagagaaaattgttacaaaaatt 33273625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 28494972 - 28494903
Alignment:
Q  189 gtattgacacaaaaaccaaaataa--tatagagaagataaaaacacaatttgaatatgagagagaaagtt 256  Q
    ||||||||||||||||||||||||  || |||||| ||||||||| ||| ||| | ||| ||||||||||    
T  28494972 gtattgacacaaaaaccaaaataatttagagagaaaataaaaacataatatgagtgtgaaagagaaagtt 28494903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 5427182 - 5427262
Alignment:
Q  190 tattgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||| ||||||||| | |||| |||||| |  |||||||| ||| ||||||| |||||| ||||| |||||||||||    
T  5427182 tattgacaaaaaaaccaacacaatagagagaaaaagtaaaaacataatgtgaatataagagaggaagttgtcacaaaaatt 5427262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 6336356 - 6336287
Alignment:
Q  196 cacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||||||||||   ||| |||||| ||||||| | ||| ||| |||||||||||||||| ||||||||    
T  6336356 cacaaaaaccaaagcgatagagagaaaataaaaatataatatgagtatgagagagaaagttgtcacaaaa 6336287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 33616541 - 33616500
Alignment:
Q  224 taaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||| | ||| |||||||||||||||||||||||||||||    
T  33616541 taaaaatataatatgaatatgagagagaaagttatcacaaaa 33616500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 268
Target Start/End: Original strand, 1907724 - 1907803
Alignment:
Q  191 attgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    ||||||||||||| ||||| |||| |||||  |  |||||||| ||| | ||||||||||| |||||| |||||||||||    
T  1907724 attgacacaaaaatcaaaacaatagagagagaaagtaaaaacataatataaatatgagagataaagttgtcacaaaaatt 1907803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 9377519 - 9377491
Alignment:
Q  237 tgaatatgagagagaaagttatcacaaaa 265  Q
    |||||||||||||||||||||||||||||    
T  9377519 tgaatatgagagagaaagttatcacaaaa 9377491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 13438789 - 13438864
Alignment:
Q  192 ttgacacaaaaaccaaaataat--atagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||||||||||||||||  |||||||| || |||||| |||  || ||| ||||||||| |||||| ||||    
T  13438789 ttgacacaaaaaccaaaataataaatagagaaaatgaaaacataatacgagtataagagagaaaattatcataaaa 13438864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 21738563 - 21738655
Alignment:
Q  176 caaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||||||  || ||| |||||||||||||  |||  | ||||  |||||| | ||| ||| ||||||||||||| ||||||||||||||    
T  21738563 caaagaaaaatatgtgttggcacaaaaaccaaagcaattgaaagaaagtaaaaatataatgtgagtatgagagagaaaattatcacaaaaatt 21738655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 39147887 - 39147800
Alignment:
Q  181 aaaaatgag-tattgacacaaaaaccaaaataat--atagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||| |||||||||||||| ||||| |||  | ||||||  |||||||| ||| ||||||||| |||||||||| | ||||||    
T  39147887 aaaaatgaggtattgacacaaaaatcaaaacaatacaaagagaaagtaaaaacataatgtgaatatgaaagagaaagttgttacaaaa 39147800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 39211182 - 39211076
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagttat 258  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||||| |||| |||||| |  |||||||| ||| ||| |||||||||||||||| |    
T  39211182 gacaatctaaatatacaaagaaatatgagtattgacacaaaaaccaaaacaatagagagaaaaagtaaaaacaaaatgtgagtatgagagagaaagttgt 39211083  T
Q  259 cacaaaa 265  Q
    || ||||    
T  39211082 caaaaaa 39211076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 6511820 - 6511896
Alignment:
Q  189 gtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||||||||||||| ||||||||| |||||| ||||||||| ||| | | |||||||||||||||||||||||||    
T  6511820 gtattgacacaaaaactaaaataatagagagaaaataaaaacataatataagtatgagagagaaagttatcacaaaa 6511896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 12284207 - 12284305
Alignment:
Q  168 taaatattcaaagaaaaatgagtattgacacaaaaaccaaaataat--atagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaa 264  Q
    ||||||| |||||||| |||||||||| |||||||||||||| |||  | ||||||  |||||||| ||| ||| |||||||||||||||| |||||||    
T  12284207 taaatatacaaagaaatatgagtattgtcacaaaaaccaaaacaataaagagagaaagtaaaaacaaaatatgagtatgagagagaaagttgtcacaaa 12284305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 33605012 - 33605102
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaa 253  Q
    |||||||||||||| ||||||||  |||||||||||||||| ||||||  |||| |||||   |||||||||||| ||| |||||||||||||    
T  33605012 gacaacctaaatatacaaagaaa--tgagtattgacacaaataccaaagcaatagagagagagtaaaaacacaatgtgagtatgagagagaaa 33605102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 33100416 - 33100505
Alignment:
Q  176 caaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||| |  ||||||||||||||| |||| ||||| |||||| |||||||   ||| ||| |||||||||||||||| ||||||||    
T  33100416 caaagaaaagtatgtattgacacaaaaatcaaagtaatagagagaaaataaaaatgtaatgtgagtatgagagagaaagttgtcacaaaa 33100505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 12734970 - 12735048
Alignment:
Q  189 gtattgacacaaaaaccaaaataatatagag--aagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||||||||| |||| ||||||||||  ||| |||||||| ||| ||| ||||||||||||| || ||||||||    
T  12734970 gtattgacacaaaaatcaaagtaatatagagataaggtaaaaacataatatgagtatgagagagaaaattgtcacaaaa 12735048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 4312689 - 4312641
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaa 209  Q
    |||||||||||||  |||||||| ||||||||||||||||||| |||||    
T  4312689 gacaacctaaatacacaaagaaatatgagtattgacacaaaaatcaaaa 4312641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 27854714 - 27854805
Alignment:
Q  176 caaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    ||||||||| | | ||||| |||||||| ||||| |||| ||||||  |||||||| ||| ||| ||||||| |||| |||||||||||||||    
T  27854714 caaagaaaattaaatattggcacaaaaatcaaaacaatagagagaaagtaaaaacataatgtgagtatgagaaagaa-gttatcacaaaaatt 27854805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 7598821 - 7598743
Alignment:
Q  189 gtattgacacaaaaaccaaaataatata--gagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||| ||||||||||| ||||||  |||||  |||||||| ||| ||| |||||||||||||||  ||||||||    
T  7598821 gtattgacataaaaaccaaaacaatatattgagaaagtaaaaacataatgtgagtatgagagagaaagtggtcacaaaa 7598743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 34639641 - 34639564
Alignment:
Q  193 tgacacaaaaaccaaaataatatagaga--agataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||| ||||||| ||||| |||||  | ||||| ||| ||| ||||||||||||||||| ||| ||||||||||    
T  34639641 tgacacaataaccaaagtaatagagagagaaaataaacacataatgtgaatatgagagagaaaattagcacaaaaatt 34639564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 36786877 - 36786807
Alignment:
Q  199 aaaaaccaaaataatatagagaaga----taaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||||||||||||| |||||| |    |||||||| ||||||| ||| |||||||||||| ||||||||    
T  36786877 aaaaaccaaaataatagagagaaaaaaaataaaaacataatttgagtataagagagaaagttgtcacaaaa 36786807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 3381702 - 3381762
Alignment:
Q  205 caaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||||||| ||||||  ||||||||  || ||| |||||||||||| ||||||||||||    
T  3381702 caaaataatagagagaatgtaaaaacatgatgtgagtatgagagagaaggttatcacaaaa 3381762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 11114657 - 11114697
Alignment:
Q  216 agagaagataaaaacacaatttgaatatgagagagaaagtt 256  Q
    |||||| ||||||||| ||| ||||||||||||||||||||    
T  11114657 agagaaaataaaaacataatgtgaatatgagagagaaagtt 11114697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 32133423 - 32133359
Alignment:
Q  204 ccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||| |||| ||||||  |||||||| ||| |||||| ||||||||||||| ||| |||||||    
T  32133423 ccaaaacaatagagagaaagtaaaaacataatgtgaataagagagagaaagttgtcaaaaaaatt 32133359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 253
Target Start/End: Original strand, 37139863 - 37139947
Alignment:
Q  169 aaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaa 253  Q
    |||||| |||||||| |||| ||||| || |||||||||||||||| |||| | ||||||||||||| |||||||||||||||||    
T  37139863 aaatatgcaaagaaatatgaatattggcataaaaaccaaaataatagagagtaaataaaaacacaatgtgaatatgagagagaaa 37139947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 47990260 - 47990328
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaa 229  Q
    ||||||| |||||| |||||||| ||||||||||||||||||| |||||||||| |||||| |||||||    
T  47990260 gacaaccaaaatatacaaagaaatatgagtattgacacaaaaatcaaaataataaagagaaaataaaaa 47990328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 44517907 - 44517998
Alignment:
Q  176 caaagaaaaatgagtattgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||||||||  ||||||||||||||| |||||||||| ||| || |  |||||||| ||| ||||||||||||||||| || ||||||||    
T  44517907 caaagaaaaatatgtattgacacaaaaatcaaaataataaagataaaaagtaaaaacaaaatgtgaatatgagagagaaaattgtcacaaaa 44517998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 611574 - 611625
Alignment:
Q  169 aaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagaga 220  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||||||||||    
T  611574 aaatatacaaagaaatatgagtattgacacaaaaaccaaaacaatatagaga 611625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 3558949 - 3558881
Alignment:
Q  197 acaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||||| ||| ||||| ||||||  |||||||| ||| ||| |||||||||||||||||||| ||||    
T  3558949 acaaaaactaaagtaatagagagaaagtaaaaacataatgtgagtatgagagagaaagttatcataaaa 3558881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 40861228 - 40861300
Alignment:
Q  196 cacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    ||||||||||||| ||| | ||||||  |||||| | ||| ||||||||||||| ||| ||||||||||||||    
T  40861228 cacaaaaaccaaagtaacagagagaaagtaaaaagataatgtgaatatgagagataaaattatcacaaaaatt 40861300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 9566919 - 9566997
Alignment:
Q  189 gtattgacacaaaaaccaaaataatatag--agaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||||||||||||||  |||| ||  ||||  |||||||| ||| ||| |||||||||||||||| ||||||||    
T  9566919 gtattgacacaaaaaccaaagcaatagagtgagaaagtaaaaacataatgtgagtatgagagagaaagttgtcacaaaa 9566997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 31827072 - 31826982
Alignment:
Q  181 aaaaatgagt-attgacacaaaaaccaaaataatatagagaa--gataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||||| ||||||||||||||||||  |||| ||||||  | |||||||| |||   | |||||||||||||||| |||||||||||    
T  31827072 aaaaatgagttattgacacaaaaaccaaatcaatagagagaaagggtaaaaacataatgcaagtatgagagagaaagttgtcacaaaaatt 31826982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 50775118 - 50775196
Alignment:
Q  192 ttgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||||||||||||  |||| |||||  |  |||||||| ||| ||| |||||||||||||||| |||||||||||    
T  50775118 ttgacacaaaaaccaaagcaatagagagataaagtaaaaacataatgtgagtatgagagagaaagttgtcacaaaaatt 50775196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 44906493 - 44906567
Alignment:
Q  191 attgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||||  ||||||||||||||||||||||  |||||| | ||| | | |||||||||||||| | ||||||||    
T  44906493 attgacatgaaaaccaaaataatatagagaaagtaaaaatataatctaagtatgagagagaaagatgtcacaaaa 44906567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 14983884 - 14983816
Alignment:
Q  190 tattgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagtt 256  Q
    ||||||||||||||| |||| |||| |||||  |  |||||||| ||| ||||||||||||||||||||    
T  14983884 tattgacacaaaaactaaaacaatagagagagaaagtaaaaacataatgtgaatatgagagagaaagtt 14983816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 1689499 - 1689423
Alignment:
Q  192 ttgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||||||| |||| ||||| | ||||  |||| | | ||| ||| |||||||||||||||| |||||||||||    
T  1689499 ttgacacaaaaatcaaagtaatagaaagaaagtaaatatataatgtgagtatgagagagaaagttgtcacaaaaatt 1689423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 8350161 - 8350233
Alignment:
Q  193 tgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||||||||||  |||| ||||||  |||||| |  || ||| |||||||||||||||| ||||||||    
T  8350161 tgacacaaaaaccaaagcaatagagagaaagtaaaaagatcatgtgagtatgagagagaaagttgtcacaaaa 8350233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 25509138 - 25509209
Alignment:
Q  189 gtattgacacaaaaaccaaaataat--atagagaagataaaaacacaatttgaatatgagagagaaagttat 258  Q
    ||||||||||||||||||||| |||  | | |||| ||||||||| ||| ||||||||||||| ||| ||||    
T  25509138 gtattgacacaaaaaccaaaacaatagaaaaagaaaataaaaacataatatgaatatgagagaaaaaattat 25509209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 30536095 - 30536023
Alignment:
Q  196 cacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||| | |||| ||||| ||||||  |||||| | ||| ||| |||||||||||||||| |||||||||||    
T  30536095 cacaaatatcaaagtaatagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcacaaaaatt 30536023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 37685437 - 37685365
Alignment:
Q  193 tgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||||| ||||  |||| ||||||  |||||| | ||| ||| |||||||||||||||| ||||||||    
T  37685437 tgacacaaaaatcaaagcaatagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaa 37685365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 37700081 - 37700153
Alignment:
Q  193 tgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||||| ||||  |||| ||||||  |||||| | ||| ||| |||||||||||||||| ||||||||    
T  37700081 tgacacaaaaatcaaagcaatagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaa 37700153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 41650839 - 41650753
Alignment:
Q  168 taaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaag 254  Q
    ||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||  |||||||| ||| ||| ||||||||| ||||    
T  41650839 taaatatacaaagaaacatgagtattgacacaaaaaccaaaacaatagagagaaagtaaaaacaaaatgtgagtatgagagaaaaag 41650753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 27386950 - 27386897
Alignment:
Q  5 tctctttcataataacaatctccatttatattttataaatgtagaggatttcaac 59  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  27386950 tctctttcataataacaatctccatttat-ttttataaatggagaggatctcaac 27386897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 49069361 - 49069284
Alignment:
Q  190 tattgacacaaaaaccaaaataatatagaga--agataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||| ||||||||||||||| |||| |||||  | ||||||||| ||| | ||||||||||||||| |||||||||||    
T  49069361 tatttacacaaaaaccaaaacaatagagagagaaaataaaaacataatgtaaatatgagagagaaaattatcacaaaa 49069284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 3937082 - 3937158
Alignment:
Q  189 gtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||| ||||||||||||| ||||| ||| ||  |||||| | ||| ||| |||||||||||||||| ||||||||    
T  3937082 gtattggcacaaaaaccaaagtaatagagataaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaa 3937158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 24532879 - 24532982
Alignment:
Q  167 ctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataat--atagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaa 264  Q
    ||||||||  ||||||| ||||||| ||||||||||||||||  |||  | ||||||  |||||||| ||| ||| ||||||||| ||| || |||||||    
T  24532879 ctaaatatataaagaaatatgagtaatgacacaaaaaccaaagcaatagagagagaaagtaaaaacataatgtgagtatgagagaaaaaattgtcacaaa 24532978  T
Q  265 aatt 268  Q
    ||||    
T  24532979 aatt 24532982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 31674989 - 31675092
Alignment:
Q  164 aacctaaatattcaaagaaaaatgagtattgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagttatcac 261  Q
    ||||||||||| ||| |||| | |||||||| |||||||||||||  |||| |||||| |  |||||||| ||| ||| |||||||| |||| || ||||    
T  31674989 aacctaaatatacaacgaaatacgagtattggcacaaaaaccaaatcaatagagagaaaaagtaaaaacaaaatgtgagtatgagagtgaaaattgtcac 31675088  T
Q  262 aaaa 265  Q
    ||||    
T  31675089 aaaa 31675092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 38259174 - 38259098
Alignment:
Q  189 gtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||||||||| ||||| |||| ||||||  |||||||| ||| | | ||||| |||||||||| ||||||||    
T  38259174 gtattgacacaaaaatcaaaacaatagagagaaagtaaaaacataatgttagtatgaaagagaaagttgtcacaaaa 38259098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 42553023 - 42552931
Alignment:
Q  176 caaagaaaaatgagtattgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    ||||||||||   |||||| |||||||||||||| || | |||||   |||||||| ||| |||||||||||| ||||||| | |||||||||    
T  42553023 caaagaaaaagaggtattggcacaaaaaccaaaacaacagagagagagtaaaaacataatatgaatatgagagggaaagttgttacaaaaatt 42552931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 17002457 - 17002371
Alignment:
Q  182 aaaatgagt-attgacacaaaaaccaaaataatata--gagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||| |||||||||||||||||| ||||| |  |||||| |||||| | ||| ||| ||||| |||||||||||||| ||||    
T  17002457 aaaatgagtgattgacacaaaaaccaaagtaatagaaagagaaggtaaaaatataatgtgagtatgaaagagaaagttatcataaaa 17002371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 47448902 - 47448861
Alignment:
Q  224 taaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||||||||||| ||| |||||||||||||||| ||||||||    
T  47448902 taaaaacacaatgtgagtatgagagagaaagttgtcacaaaa 47448861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 22605466 - 22605394
Alignment:
Q  193 tgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||||||||||| |||| |||||| ||||||| | ||| ||| | ||||||||| ||||  |||||||    
T  22605466 tgacacaaaaaccaaaacaatagagagaaaataaaaagagaatgtgagtttgagagagatagttgccacaaaa 22605394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 31322083 - 31322032
Alignment:
Q  9 tttcataataacaatctccatttatattttataaatgtagaggatttcaactc 61  Q
    ||||||||| ||||||| ||||||| ||||||||||| ||||||| |||||||    
T  31322083 tttcataatgacaatcttcatttat-ttttataaatggagaggatctcaactc 31322032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 33578267 - 33578351
Alignment:
Q  182 aaaatgagt-attgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||| ||||| |||||||||||||||||| ||||||  |||||| | ||| | ||||||| | |||||||| ||| ||||    
T  33578267 aaaatgagtgattgatacaaaaaccaaaataatagagagaaagtaaaaatataatgtaaatatgaaaaagaaagttgtcataaaa 33578351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 37134384 - 37134439
Alignment:
Q  5 tctctttcataataacaatctccatttatattttataaatgtagaggatttcaactc 61  Q
    ||||| ||||||| ||||||||| ||||| ||||||||||| ||||||| |||||||    
T  37134384 tctctatcataatgacaatctccgtttat-ttttataaatggagaggatctcaactc 37134439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 38340344 - 38340419
Alignment:
Q  192 ttgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    |||| ||||||||||||| |||| |||||| |  |||||||| ||| ||| ||||||||| |||||| ||||||||    
T  38340344 ttgagacaaaaaccaaaacaatagagagaaaaagtaaaaacataatgtgagtatgagagataaagttgtcacaaaa 38340419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 41399091 - 41399199
Alignment:
Q  159 ttgacaacctaaatattcaaagaaaaa-tgagtattgacacaaaaaccaaaataatatagaga-agataaaaacacaatttgaatatgagagagaaagtt 256  Q
    ||||||||| |||| | |||||||||| | |||||| |||| |||||||||| |||| ||||| | |  |||| | ||| ||| ||||||||| ||||||    
T  41399091 ttgacaaccaaaatttacaaagaaaaaataagtatttacacgaaaaccaaaacaatagagagataaagtaaaaaataatatgagtatgagagataaagtt 41399190  T
Q  257 atcacaaaa 265  Q
    |||||||||    
T  41399191 atcacaaaa 41399199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 13423094 - 13423000
Alignment:
Q  176 caaagaaaaatgagtattgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||||||  |||||| ||||||||| ||||||||| |||||  |  |||||| | ||| ||| |||||||||||||||| |||||||||||    
T  13423094 caaagaaaaatatgtattggcacaaaaactaaaataatagagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcacaaaaatt 13423000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 268
Target Start/End: Original strand, 2241986 - 2242061
Alignment:
Q  191 attgacacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    ||||||||||||||||||  ||||  ||||| ||||||||  ||| ||| |||||||||||||||| |||||||||||    
T  2241986 attgacacaaaaaccaaagcaata--gagaaaataaaaacttaatgtgagtatgagagagaaagttgtcacaaaaatt 2242061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 5694110 - 5694191
Alignment:
Q  189 gtattgacacaaaaaccaaaataatatagagaaga--taaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    ||||||||||||||| ||||| |||| |||||| |  |||||||| ||| ||||||||||| | ||| ||||||||||||||    
T  5694110 gtattgacacaaaaatcaaaacaatagagagaaaaagtaaaaacataatgtgaatatgagaaataaaattatcacaaaaatt 5694191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 34047498 - 34047421
Alignment:
Q  190 tattgacacaaaaaccaaaataatatagaga--agataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||| |||||||||||||  |||| |||||  ||||||||| | ||| ||| |||||||||||||||| ||||||||    
T  34047498 tattggcacaaaaaccaaagcaatagagagataagataaaaagataatgtgagtatgagagagaaagttgtcacaaaa 34047421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 17551339 - 17551415
Alignment:
Q  191 attgacacaaaaaccaaaataatatagag--aagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||||||||||||||| |||| ||||  ||  |||||||| ||| ||| |||||||||||||||| | ||||||    
T  17551339 attgacacaaaaaccaaaacaatagagagataaagtaaaaacataatgtgagtatgagagagaaagttgttacaaaa 17551415  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 34850769 - 34850732
Alignment:
Q  169 aaatattcaaagaaaaatgagtattgacacaaaaacca 206  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  34850769 aaatatacaaagaaatatgagtattgacacaaaaacca 34850732  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 5522605 - 5522677
Alignment:
Q  196 cacaaaaaccaaaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 268  Q
    |||||||||||||  |||| ||||||  |||||  | ||| ||||||||||||| |||||| |||||||||||    
T  5522605 cacaaaaaccaaagcaatagagagaaagtaaaagtataatgtgaatatgagagataaagttgtcacaaaaatt 5522677  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 33195263 - 33195303
Alignment:
Q  174 ttcaaagaaaaatgagtattgacacaaaaaccaaaataata 214  Q
    ||||||||||||| |||||||||||||||| ||||| ||||    
T  33195263 ttcaaagaaaaataagtattgacacaaaaatcaaaacaata 33195303  T

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Target: scaffold0343 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 8980 - 8938
Alignment:
Q  161 gacaacctaaatattcaaagaaaaatgagtattgacacaaaaa 203  Q
    ||||||| |||||| |||||||| |||||||||||||||||||    
T  8980 gacaaccaaaatatacaaagaaatatgagtattgacacaaaaa 8938  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 366368 - 366328
Alignment:
Q  225 aaaaacacaatttgaatatgagagagaaagttatcacaaaa 265  Q
    ||||||| ||| |||||||||||||||||||| ||||||||    
T  366368 aaaaacataatgtgaatatgagagagaaagttgtcacaaaa 366328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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