View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_low_35 (Length: 247)
Name: NF19742_low_35
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 7840471 - 7840236
Alignment:
| Q |
1 |
atgagtcttagcattaaatatgttctatcatcattaattatatttaagagtttttgtgtctttatctatcctatttgaagaagtggagaa-agtttaaat |
99 |
Q |
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| T |
7840471 |
atgagtcttagaattaaatatgttccatcatcattaattatatttaagagtttttatgtctttatctatcctatttgaagaaatggagaatagtttaaat |
7840372 |
T |
|
| Q |
100 |
ggtaatgatcttaactcttgttaagttaaaacttttatattgcaagatgacgaatacgttcaatttgatggagtcatgagaatagctcacgcagcattga |
199 |
Q |
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| T |
7840371 |
ggtgatgatcttaactcttgttaagttaaaacttttatattgcaagatgacgaatacgttcaatttgatggagtcataagaatagctcacgcagcattga |
7840272 |
T |
|
| Q |
200 |
ttcattcataggcattttatagtccgcacacaggtt |
235 |
Q |
| |
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| T |
7840271 |
ttcattcataggcattttatggtccgcacacaggtt |
7840236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 2582415 - 2582455
Alignment:
| Q |
27 |
atcatcattaattatatttaagagtttttgtgtctttatct |
67 |
Q |
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| T |
2582415 |
atcatcattaattatttttaagattttttgtgtctatatct |
2582455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 54588891 - 54588837
Alignment:
| Q |
13 |
attaaatatgttctatcatcattaattatatttaagagtttttgtgtctttatct |
67 |
Q |
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| T |
54588891 |
attaaataagttctaccatcattaattatttataagattttttgtgtttttatct |
54588837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 32577553 - 32577449
Alignment:
| Q |
12 |
cattaaatatgttctatcatcattaattatatttaagagtttttgtgtctttatctatcctatttgaagaagtggagaa-agtttaaatggtaatgatct |
110 |
Q |
| |
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|||||||| |||| | ||||||||||| | || |||| ||||||||||||||||| ||| | | |||||| ||||||| ||||||||||| || |||| |
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| T |
32577553 |
cattaaatgagttccaccatcattaatttttttcaaga-tttttgtgtctttatctctccaaatagaagaaatggagaagagtttaaatggaaaggatcc |
32577455 |
T |
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| Q |
111 |
taactc |
116 |
Q |
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|||||| |
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|
| T |
32577454 |
taactc |
32577449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 30824180 - 30824095
Alignment:
| Q |
32 |
cattaattatatttaagagtttttgtgtctttatctatcctatttgaagaagtggagaa-agtttaaatggtaatgatcttaactc |
116 |
Q |
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|||||||||| ||||||| ||||||||||| ||||| || | | |||||| ||||||| || |||||||| || ||||||||||| |
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| T |
30824180 |
cattaattatttttaagattttttgtgtctatatctctctaaatggaagaaatggagaagagattaaatggaaaggatcttaactc |
30824095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 41073010 - 41073047
Alignment:
| Q |
30 |
atcattaattatatttaagagtttttgtgtctttatct |
67 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
41073010 |
atcattaattatttttaagattttttgtgtctttatct |
41073047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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