View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_low_38 (Length: 224)
Name: NF19742_low_38
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_low_38 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 12356214 - 12356010
Alignment:
| Q |
20 |
caagcaacacacttatatgccatttgatgccacaaaagcaaattcgataaccactatgcttggttcttgtgatctttgtaaaactgtaatcacattcctc |
119 |
Q |
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| T |
12356214 |
caagcaacacgcttatatgccatttgatgccacaaaagcaaattcgataaccactatgcttggctcttgtgatctttgtaaaactgtaattacattcctc |
12356115 |
T |
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| Q |
120 |
atggataactctaatcatctcaatttgattttcaaatttcgaaagtgcgtaaatatttaagtgatattttatctcgtatctgagattagattgagtccta |
219 |
Q |
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| T |
12356114 |
atggataactctaatcatctcaatttgatttgcaaatttcgaaagtgcgtaaatatttaagtgatgttttatctcgtatctgagattagattgagtccta |
12356015 |
T |
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| Q |
220 |
tgttt |
224 |
Q |
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||||| |
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| T |
12356014 |
tgttt |
12356010 |
T |
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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 12395109 - 12395021
Alignment:
| Q |
34 |
atatgccatttgatgccacaaaagcaaattcgataaccactatgcttggttcttgtgatctttgtaaaactgtaatcacattcctcatg |
122 |
Q |
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|||| ||||||||||| |||||||||||| | || || ||||||||||||||| | || ||| ||||| |||||||||||||||||||| |
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| T |
12395109 |
atataccatttgatgctacaaaagcaaatgccattacaactatgcttggttctcgcgaacttggtaaagctgtaatcacattcctcatg |
12395021 |
T |
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