View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19742_low_7 (Length: 596)

Name: NF19742_low_7
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19742_low_7
NF19742_low_7
[»] chr3 (7 HSPs)
chr3 (18-506)||(49868345-49868832)
chr3 (508-586)||(49868215-49868293)
chr3 (57-141)||(39558982-39559066)
chr3 (240-274)||(39558935-39558969)
chr3 (526-559)||(39559486-39559519)
chr3 (514-562)||(50815184-50815232)
chr3 (514-562)||(50860632-50860680)
[»] scaffold0543 (2 HSPs)
scaffold0543 (514-566)||(2368-2420)
scaffold0543 (399-432)||(2563-2596)
[»] scaffold0492 (2 HSPs)
scaffold0492 (514-566)||(3914-3966)
scaffold0492 (399-432)||(4109-4142)


Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Complemental strand, 49868832 - 49868345
Alignment:
Q  18 aaaacgatatcaatgattttgtttataatgtagttcaaggaggagttaaaaacctaaccatcgatctctgcctttactccaaaaccacattgcctacttt 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49868832 aaaacgatatcaatgattttgtttataatgaagttcaaggaggagttaaaaacctaaccatcgatctctgcctttactccaaaactacattgcctacttt 49868733  T
Q  118 cgttcttactaccaaaaccttgacaaagttccacaagttcatcttcccttgctcaaacttctccacttggaatctgttactttcatatattatcaacatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49868732 cgttcttactaccaaaaccttgacaaagttccacaagttcatcttcccttgctcaaacttctccacttggaatctgttactttcatatattatcaacatt 49868633  T
Q  218 acttgaagcttttctacggttctcccattctagaggagttggaaacaaaggatttaagtttaaagaaaaataattatggaggtcttaaggtgcttttaag 317  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49868632 acttgaagcttttctacggttctcc-attctagaggagttggaaacaaaggatttaagtttaaagaaaaataattatggaggtcttaaggtgcttttaag 49868534  T
Q  318 cctatccaattttggtaagagctaacgtttctgataattttattgagtatgattggcttcataacgccaacaatctctgcattagtctcttaaattcaac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49868533 cctatccaattttggtaagagctaacgtttctgataattttattgagtatgattggcttcataacgccaacaatctctgcattagtctcttaaattcaac 49868434  T
Q  418 aagttaattagtttactctttaactttatagctcatgcagacagggtccattacattacaatgcatgtttcataatttaacccacctga 506  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49868433 aagttaattagttcactctttaactttatagctcatgcagacagggtccattacattacaatgcatgtttcataatttaacccacctga 49868345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 508 - 586
Target Start/End: Complemental strand, 49868293 - 49868215
Alignment:
Q  508 tgattgaactgcttgaaaatttccctaaacttcaaactcttatcattcatgaggttttttaacgttccattgccctttg 586  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  49868293 tgattgaactgcttgaaaatttccctaaacttcaaactcttatcattcataaggttttttaacgttccattgccctttg 49868215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 39558982 - 39559066
Alignment:
Q  57 gaggagttaaaaacctaaccatcgatctctgcctttactccaaaaccacattgcctactttcgttcttactaccaaaaccttgac 141  Q
    |||||||| ||||||||| |||||||||||||| | | |||||||||||||||||| |||| ||||| |||| ||||||||||||    
T  39558982 gaggagttgaaaacctaagcatcgatctctgccataaatccaaaaccacattgccttctttagttctaactaacaaaaccttgac 39559066  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 39558935 - 39558969
Alignment:
Q  240 tcccattctagaggagttggaaacaaaggatttaa 274  Q
    |||||||||||||||||||||| ||||||||||||    
T  39558935 tcccattctagaggagttggaagcaaaggatttaa 39558969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 559
Target Start/End: Original strand, 39559486 - 39559519
Alignment:
Q  526 atttccctaaacttcaaactcttatcattcatga 559  Q
    ||||||| ||||||||||||||||||||||||||    
T  39559486 atttccccaaacttcaaactcttatcattcatga 39559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 562
Target Start/End: Original strand, 50815184 - 50815232
Alignment:
Q  514 aactgcttgaaaatttccctaaacttcaaactcttatcattcatgaggt 562  Q
    ||||||||  ||||||||| || ||||||||||||||||||| ||||||    
T  50815184 aactgcttccaaatttccccaagcttcaaactcttatcattcgtgaggt 50815232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 562
Target Start/End: Complemental strand, 50860680 - 50860632
Alignment:
Q  514 aactgcttgaaaatttccctaaacttcaaactcttatcattcatgaggt 562  Q
    ||||||||  ||||||||| || ||||||||||||||||||| ||||||    
T  50860680 aactgcttccaaatttccccaagcttcaaactcttatcattcgtgaggt 50860632  T

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Target: scaffold0543 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 514 - 566
Target Start/End: Complemental strand, 2420 - 2368
Alignment:
Q  514 aactgcttgaaaatttccctaaacttcaaactcttatcattcatgaggttttt 566  Q
    ||||||||||||||||||| ||||||||||||||||||||| | |||||||||    
T  2420 aactgcttgaaaatttccccaaacttcaaactcttatcattgaagaggttttt 2368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 432
Target Start/End: Complemental strand, 2596 - 2563
Alignment:
Q  399 ttagtctcttaaattcaacaagttaattagttta 432  Q
    |||||||||||||||||| |||||||||||||||    
T  2596 ttagtctcttaaattcaaaaagttaattagttta 2563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 514 - 566
Target Start/End: Complemental strand, 3966 - 3914
Alignment:
Q  514 aactgcttgaaaatttccctaaacttcaaactcttatcattcatgaggttttt 566  Q
    ||||||||||||||||||| ||||||||||||||||||||| | |||||||||    
T  3966 aactgcttgaaaatttccccaaacttcaaactcttatcattgaagaggttttt 3914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 432
Target Start/End: Complemental strand, 4142 - 4109
Alignment:
Q  399 ttagtctcttaaattcaacaagttaattagttta 432  Q
    |||||||||||||||||| |||||||||||||||    
T  4142 ttagtctcttaaattcaaaaagttaattagttta 4109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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