View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_low_8 (Length: 574)
Name: NF19742_low_8
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_low_8 |
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| [»] scaffold0287 (3 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 16873 - 16566
Alignment:
| Q |
14 |
caaaggcatgtgatgtgttacaggaaagggaactatggttacctgaagttcggtaggaggtaaatatagtctgactatcaaatattatttcatccaagaa |
113 |
Q |
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||||||||||||||||||||| || |||| |||| |||||| ||| |||| |||||||||||| |||||||||||||||||||||| ||||| ||||||| |
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| T |
16873 |
caaaggcatgtgatgtgttacggggaaggaaactctggttatctggagtttggtaggaggtaagtatagtctgactatcaaatattgtttcacccaagaa |
16774 |
T |
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| Q |
114 |
tcgtattcgggttcactcatgaattcaatatttgtgtttttaacattcttttctttcttttggattgtggggtgtgcc-nnnnnnnnnnngtcttttgta |
212 |
Q |
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| T |
16773 |
tcgtacttgggttcactcatgaatccaatgtttatgttttttacattcttttctttcttttggattgtggggtgtgcctattttttttttgtcttttgta |
16674 |
T |
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| Q |
213 |
tgattgtgcaataaaaaaggaggatggaaattagacttagggggtttaggcgtgtagattatgtactaacaaaagtaaaataaatgaagagtaattaggt |
312 |
Q |
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| T |
16673 |
tgattgtgcaataaaaaaggaggatggaaattagactta-ggggtttaggcgtgtagattatgtactaacaaaagtaaaataaatgaagagtagttaggt |
16575 |
T |
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| Q |
313 |
cgctatagg |
321 |
Q |
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| T |
16574 |
cactatagg |
16566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 499 - 574
Target Start/End: Complemental strand, 16389 - 16314
Alignment:
| Q |
499 |
taattacatcacaaatctttgctgatccatgtaaccttttctttcacaggcttttatttttaaaagacaaaattac |
574 |
Q |
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| T |
16389 |
taattacatcacaaatctttgctgatccatggaaccttttctttcacaggcttttatttttaaaagacaaaattac |
16314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 378 - 433
Target Start/End: Complemental strand, 16509 - 16454
Alignment:
| Q |
378 |
atggtatatgatagagcattattgcatcttttgattgatgtagccaacctcaaaga |
433 |
Q |
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| T |
16509 |
atggtatatgatagagcattattgcatcttttgatcgatgtagccaacctcaaaga |
16454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 3629212 - 3629519
Alignment:
| Q |
14 |
caaaggcatgtgatgtgttacaggaaagggaactatggttacctgaagttcggtaggaggtaaatatagtctgactatcaaatattatttcatccaagaa |
113 |
Q |
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||||||||||||||||||||| || |||| |||| |||||| ||| |||| |||||||||||| |||||||||||||||||||||| ||||| ||||||| |
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| T |
3629212 |
caaaggcatgtgatgtgttacggggaaggaaactctggttatctggagtttggtaggaggtaagtatagtctgactatcaaatattgtttcacccaagaa |
3629311 |
T |
|
| Q |
114 |
tcgtattcgggttcactcatgaattcaatatttgtgtttttaacattcttttctttcttttggattgtggggtgtgcc-nnnnnnnnnnngtcttttgta |
212 |
Q |
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| T |
3629312 |
tcgtacttgggttcactcatgaatccaatgtttatgttttttacattcttttctttcttttggattgtggggtgtgcctattttttttttgtcttttgta |
3629411 |
T |
|
| Q |
213 |
tgattgtgcaataaaaaaggaggatggaaattagacttagggggtttaggcgtgtagattatgtactaacaaaagtaaaataaatgaagagtaattaggt |
312 |
Q |
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| T |
3629412 |
tgattgtgcaataaaaaaggaggatggaaattagactta-ggggtttaggcgtgtagattatgtactaacaaaagtaaaataaatgaagagtagttaggt |
3629510 |
T |
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| Q |
313 |
cgctatagg |
321 |
Q |
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| T |
3629511 |
cactatagg |
3629519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 499 - 574
Target Start/End: Original strand, 3629696 - 3629771
Alignment:
| Q |
499 |
taattacatcacaaatctttgctgatccatgtaaccttttctttcacaggcttttatttttaaaagacaaaattac |
574 |
Q |
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| T |
3629696 |
taattacatcacaaatctttgctgatccatggaaccttttctttcacaggcttttatttttaaaagacaaaattac |
3629771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 378 - 433
Target Start/End: Original strand, 3629576 - 3629631
Alignment:
| Q |
378 |
atggtatatgatagagcattattgcatcttttgattgatgtagccaacctcaaaga |
433 |
Q |
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| T |
3629576 |
atggtatatgatagagcattattgcatcttttgatcgatgtagccaacctcaaaga |
3629631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 426
Target Start/End: Original strand, 11284189 - 11284237
Alignment:
| Q |
378 |
atggtatatgatagagcattattgcatcttttgattgatgtagccaacc |
426 |
Q |
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| T |
11284189 |
atggtatatgattgaacattattgcatcgtttgatccatgtagccaacc |
11284237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 426
Target Start/End: Original strand, 12141745 - 12141793
Alignment:
| Q |
378 |
atggtatatgatagagcattattgcatcttttgattgatgtagccaacc |
426 |
Q |
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| T |
12141745 |
atggtatatgatagaacattatggcatgatttgatcgatgtagccaacc |
12141793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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