View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19742_low_9 (Length: 572)
Name: NF19742_low_9
Description: NF19742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19742_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 18 - 557
Target Start/End: Complemental strand, 36939702 - 36939163
Alignment:
| Q |
18 |
agaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939702 |
agaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccc |
36939603 |
T |
|
| Q |
118 |
aaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939602 |
aaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactata |
36939503 |
T |
|
| Q |
218 |
cacgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccctgctaaagctgtagtttgtgcaccttttgcatgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939502 |
cacgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccctgctaaagctgtagtttgtgcaccttttgcatgg |
36939403 |
T |
|
| Q |
318 |
tccacaaaccttgctaaaccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939402 |
tccacaaaccttgctaaaccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgtt |
36939303 |
T |
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| Q |
418 |
cccattcttcatgcaaatataacagtgcagaagccaagcctctagctattgtatatctaacaccccatttcaagaaactttgatttttgaaaagatgaat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939302 |
cccattcttcatgcaaatataacagtgcagaagccaagcctctagctattgtatatctaacaccccatttcaagaaactttgatttttgaaaagatgaat |
36939203 |
T |
|
| Q |
518 |
gtctaaactaccatttggcatgtactcatatacaagtaaa |
557 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
36939202 |
gtctaaactaccatttggcatgtactcatatacaagtaaa |
36939163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Original strand, 36941422 - 36941951
Alignment:
| Q |
18 |
agaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
36941422 |
agaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagccccc |
36941521 |
T |
|
| Q |
118 |
aaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactata |
217 |
Q |
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||||||| |||||||| | |||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
36941522 |
aaacccattccacaatgtttatttcattttcttgagcattaa------ttattggttttcttccacaagctatctctaaagcaacaattccaaaactata |
36941615 |
T |
|
| Q |
218 |
cacgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccctgctaaagctgtagtttgtgcaccttttgcatgg |
317 |
Q |
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||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| |
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| T |
36941616 |
cacatcggtttctttactggcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgctaaagctgtggtttgtccaccttttgcatga |
36941715 |
T |
|
| Q |
318 |
tccacaaaccttgctaaaccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941716 |
tccacaaaccttgctaaaccgaaatctccaagttttgcgttaaattctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgtt |
36941815 |
T |
|
| Q |
418 |
cccattcttcatgcaaatataacagtgcagaagccaagcctctagctattgtatatctaacaccccatttcaagaaactttgatttttgaaaagatgaat |
517 |
Q |
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|||||||||||||||| || |||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |
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| T |
36941816 |
cccattcttcatgcaagtacaacaatgcagatgccaagcctttagctattgtatatctaacaccccatttcaacaaactttgtttcttgaaaagatgaat |
36941915 |
T |
|
| Q |
518 |
gtctaaactaccatttggcatgtactcatatacaag |
553 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
36941916 |
gtctaaactaccatttggcatgtactcatacacaag |
36941951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 436
Target Start/End: Complemental strand, 36934535 - 36934468
Alignment:
| Q |
369 |
tccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaaata |
436 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| ||||| | ||||||| |||||||||||| |||||||| |
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| T |
36934535 |
tccaacattatgttgcttgattttatgtccctatgaatcacacatttttcccattcttcctgcaaata |
36934468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 36949613 - 36949483
Alignment:
| Q |
336 |
ccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaaat |
435 |
Q |
| |
|
|||||||||||||| |||| ||| || | ||||||||||| | || |||| ||||||||||||||||| ||||| || || || |||||||||| | |
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| T |
36949613 |
ccgaaatctccaagctttgtattgaaattagaatccaacataacattgcttgattttatgtctctatgtagcacacaatgctcacactcttcatgcaggt |
36949514 |
T |
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| Q |
436 |
ataacagtgcagaagccaagcctctagctat |
466 |
Q |
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| || | ||| || ||||| ||||||||||| |
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| T |
36949513 |
acaataatgccgaggccaaacctctagctat |
36949483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 36959747 - 36959617
Alignment:
| Q |
336 |
ccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaaat |
435 |
Q |
| |
|
|||||||||||||| |||| ||| || | ||||||||||| | || |||| ||||||||||||||||| ||||| || || || |||||||||| | |
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| T |
36959747 |
ccgaaatctccaagctttgtattgaaattagaatccaacataacattgcttgattttatgtctctatgtagcacacaatgctcacactcttcatgcaggt |
36959648 |
T |
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| Q |
436 |
ataacagtgcagaagccaagcctctagctat |
466 |
Q |
| |
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| || | ||| || ||||| ||||||||||| |
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| T |
36959647 |
acaataatgccgaggccaaacctctagctat |
36959617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 454
Target Start/End: Complemental strand, 47871658 - 47871573
Alignment:
| Q |
369 |
tccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaaatataacagtgcagaagccaa |
454 |
Q |
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|||||||| ||||| || | ||||||||||||||| | ||||||||||||||||||||||| | ||| |||| ||| |||||||| |
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| T |
47871658 |
tccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccgaagccaa |
47871573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 441
Target Start/End: Original strand, 22912767 - 22912827
Alignment:
| Q |
381 |
ttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaaatataaca |
441 |
Q |
| |
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||||| ||||| ||||||||||| | |||| |||||||||||||||||| ||||| |||| |
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|
| T |
22912767 |
ttactagctttaatgtctctatgaataacaacttgttcccattcttcatgtaaataaaaca |
22912827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 3054432 - 3054491
Alignment:
| Q |
186 |
gctatctctaaagcaacaataccaaaactatacacgtctgtttctttactagctcttcct |
245 |
Q |
| |
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|||| ||| ||||||||||| ||||||||||||| ||| | |||||||||||| |||||| |
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| T |
3054432 |
gctagctccaaagcaacaattccaaaactatacatgtcagattctttactagcccttcct |
3054491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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